Variant report

Variant	rs376541022
Chromosome Location	chr15:43585172-43585173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000168803	Chromatin interaction
ENSG00000166946	Chromatin interaction
ENSG00000168806	Chromatin interaction
ENSG00000261687	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3324196	chr15:43584885-43587433	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43584600-43585400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:43584600-43585600	Enhancers	Adipose Nuclei	Adipose
3	chr15:43584800-43585200	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr15:43584800-43585200	Bivalent Enhancer	NH-A	brain
5	chr15:43584800-43585800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:43584800-43586000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:43584800-43586000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr15:43584800-43586400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:43585000-43585200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:43585000-43585200	Bivalent Enhancer	HepG2	liver
11	chr15:43585000-43585800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr15:43585000-43586600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links