Variant report

Variant	rs3765839
Chromosome Location	chr1:210623176-210623177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11119499	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11588425	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3765849	0.95[ASN][1000 genomes]
rs3765850	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67834052	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
4	chr1:210614600-210641200	Weak transcription	Gastric	stomach
5	chr1:210614800-210623800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:210620200-210637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:210620400-210623800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:210620400-210626000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:210622000-210630800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:210622400-210631600	Weak transcription	HSMM	muscle
11	chr1:210622800-210623400	Strong transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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