Variant report

Variant	rs3765869
Chromosome Location	chr1:210557911-210557912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210557280..210560870-chr1:210565323..210568970,3	MCF-7	breast:
2	chr1:210557629..210560572-chr1:210562217..210564495,2	MCF-7	breast:
3	chr1:210550399..210552265-chr1:210555579..210558136,2	MCF-7	breast:
4	chr1:210550122..210554367-chr1:210555411..210560476,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489387	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11119480	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1883655	0.80[AMR][1000 genomes]
rs2066721	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2103691	0.80[AMR][1000 genomes]
rs2294847	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2294848	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3765867	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs3765868	0.87[EUR][1000 genomes]
rs3765873	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3765880	0.80[AMR][1000 genomes]
rs3819987	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4844522	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs6540590	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6540591	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs761170	0.86[EUR][1000 genomes]
rs761172	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs764585	0.80[AMR][1000 genomes]
rs910028	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs910033	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs9970232	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
2	esv3445589	chr1:210557577-210557976	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210536800-210558800	Weak transcription	Fetal Stomach	stomach
3	chr1:210538400-210565600	Weak transcription	Esophagus	oesophagus
4	chr1:210543200-210565200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210546600-210566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:210548600-210566400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210551200-210566600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:210557000-210559400	Enhancers	HepG2	liver
10	chr1:210557200-210559000	Enhancers	NH-A	brain
11	chr1:210557400-210559200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:210557600-210558000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:210557600-210558200	Enhancers	Gastric	stomach
14	chr1:210557600-210558400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:210557600-210559000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:210557600-210559000	Enhancers	NHLF	lung
17	chr1:210557600-210559200	Enhancers	HSMM	muscle
18	chr1:210557600-210559400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:210557600-210559400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:210557600-210559400	Enhancers	Osteobl	bone
21	chr1:210557800-210558400	Enhancers	NHDF-Ad	bronchial
22	chr1:210557800-210558800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:210557800-210559400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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