Variant report

Variant	rs376636838
Chromosome Location	chr7:16643638-16643639
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16643475..16644221-chr7:16957387..16958014,2	MCF-7	breast:
2	chr7:16637135..16639582-chr7:16641679..16644005,2	K562	blood:
3	chr7:16642756..16644444-chr7:16668487..16671282,2	K562	blood:
4	chr7:16639597..16641925-chr7:16642837..16645779,2	K562	blood:
5	chr7:16642489..16644865-chr7:16673141..16675282,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv887758	chr7:16632561-16668034	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv522819	chr7:16639615-16655387	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887759	chr7:16642995-16686940	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16624000-16645600	Weak transcription	Gastric	stomach
2	chr7:16627800-16654200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:16634200-16649600	Weak transcription	Hela-S3	cervix
4	chr7:16635600-16654800	Weak transcription	Spleen	Spleen
5	chr7:16636200-16649400	Weak transcription	Small Intestine	intestine
6	chr7:16636400-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:16636600-16648800	Weak transcription	HMEC	breast
8	chr7:16637400-16668400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:16637600-16644800	Strong transcription	Dnd41	blood
10	chr7:16637600-16644800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:16637800-16644600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:16637800-16644600	Strong transcription	Primary T cells from cord blood	blood
13	chr7:16637800-16644600	Strong transcription	Liver	Liver
14	chr7:16637800-16644600	Strong transcription	HSMM	muscle
15	chr7:16637800-16644800	Strong transcription	Adipose Nuclei	Adipose
16	chr7:16637800-16644800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr7:16637800-16644800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr7:16637800-16649800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:16637800-16651600	Strong transcription	Fetal Muscle Leg	muscle
20	chr7:16637800-16652000	Strong transcription	Fetal Muscle Trunk	muscle
21	chr7:16637800-16654800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:16637800-16661600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:16637800-16664800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:16638000-16644000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:16638000-16644800	Strong transcription	Placenta	Placenta
26	chr7:16638000-16649000	Strong transcription	Fetal Stomach	stomach
27	chr7:16638000-16656200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:16638000-16658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:16638000-16660200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:16638000-16670800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:16638200-16655200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:16638200-16656200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:16638200-16659800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:16638400-16647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:16638400-16654800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:16638400-16661600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:16638400-16670000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:16638400-16670200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:16638800-16644800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:16639000-16644000	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:16639000-16644200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr7:16639000-16644600	Strong transcription	Ovary	ovary
43	chr7:16639000-16646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:16639000-16654200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr7:16639000-16655000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:16639000-16656600	Strong transcription	Left Ventricle	heart
47	chr7:16639200-16644400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:16639200-16644800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:16639400-16643800	Strong transcription	Brain Germinal Matrix	brain
50	chr7:16639400-16644000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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