Variant report

Variant	rs376650223
Chromosome Location	chr19:44841313-44841314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44832482..44835383-chr19:44840174..44844169,3	MCF-7	breast:
2	chr19:44841145..44843332-chr19:44846743..44848513,2	K562	blood:
3	chr19:44840012..44842382-chr19:44842784..44845287,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382907	chr19:44840612-44842610	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr19:44828600-44844200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
7	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
8	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:44828800-44842600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:44829000-44844000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:44830400-44845000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr19:44830600-44845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr19:44830800-44845600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:44831600-44841400	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:44831800-44845000	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:44832000-44845600	Weak transcription	Hela-S3	cervix
22	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:44837400-44841400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr19:44837400-44841400	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr19:44837400-44841400	ZNF genes & repeats	Pancreas	Pancrea
26	chr19:44837400-44844800	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr19:44837400-44845200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
29	chr19:44838000-44841600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr19:44838600-44841400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:44838600-44841400	ZNF genes & repeats	Lung	lung
32	chr19:44839000-44842000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
33	chr19:44839400-44841600	Strong transcription	HUVEC	blood vessel
34	chr19:44839400-44845000	Strong transcription	NH-A	brain
35	chr19:44839400-44845200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:44839400-44845600	Weak transcription	Stomach Mucosa	stomach
37	chr19:44839800-44841400	Strong transcription	Brain Anterior Caudate	brain
38	chr19:44839800-44842400	Strong transcription	Colon Smooth Muscle	Colon
39	chr19:44839800-44846400	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:44840000-44841800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr19:44840000-44845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr19:44840200-44842200	Weak transcription	Thymus	Thymus
43	chr19:44840200-44843400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr19:44840200-44843400	Strong transcription	Fetal Intestine Large	intestine
45	chr19:44840400-44845200	Strong transcription	HSMM	muscle
46	chr19:44840400-44846200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr19:44840600-44844600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:44840800-44841400	ZNF genes & repeats	Fetal Stomach	stomach
49	chr19:44840800-44841400	Weak transcription	Fetal Thymus	thymus
50	chr19:44840800-44842400	Weak transcription	Rectal Mucosa Donor 31	rectum

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