Variant report

Variant	rs376676340
Chromosome Location	chr10:44877946-44877947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv550699	chr10:44868257-44882203	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv895089	chr10:44874867-44880838	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895090	chr10:44874867-44884959	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895092	chr10:44875166-44884959	Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv895093	chr10:44876461-44884959	Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv895094	chr10:44876499-44884959	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv895095	chr10:44876586-44884959	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv895098	chr10:44877501-44881202	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44860000-44879000	Weak transcription	Gastric	stomach
2	chr10:44865600-44878000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:44866400-44878600	Weak transcription	Liver	Liver
4	chr10:44867000-44878200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:44867400-44878000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:44867600-44878600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:44869600-44878200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:44874800-44879200	Weak transcription	Aorta	Aorta
9	chr10:44875200-44878000	Weak transcription	NH-A	brain
10	chr10:44875800-44878000	Weak transcription	NHLF	lung
11	chr10:44876000-44878000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:44876000-44878600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:44876200-44878400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:44876400-44878000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:44876600-44878000	Weak transcription	Brain Anterior Caudate	brain
16	chr10:44876800-44878200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:44877400-44878200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr10:44877400-44878400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr10:44877400-44879200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:44877400-44880400	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr10:44877400-44880400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr10:44877600-44878000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:44877600-44878000	Active TSS	H9 Cell Line	embryonic stem cell
24	chr10:44877600-44878000	Flanking Active TSS	Fetal Lung	lung
25	chr10:44877600-44878000	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr10:44877600-44878200	Flanking Active TSS	Pancreas	Pancrea
27	chr10:44877600-44878400	Enhancers	Lung	lung
28	chr10:44877600-44878400	Flanking Active TSS	Osteobl	bone
29	chr10:44877600-44878600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:44877600-44878600	Active TSS	Duodenum Mucosa	Duodenum
31	chr10:44877600-44878600	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr10:44877600-44878600	Active TSS	Fetal Brain Female	brain
33	chr10:44877600-44878800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr10:44877600-44878800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:44877600-44879200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:44877600-44879200	Active TSS	Colon Smooth Muscle	Colon
37	chr10:44877600-44879200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
38	chr10:44877600-44879600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
39	chr10:44877600-44880400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr10:44877600-44880800	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr10:44877600-44881000	Bivalent/Poised TSS	Fetal Thymus	thymus
42	chr10:44877600-44881200	Active TSS	Rectal Smooth Muscle	rectum
43	chr10:44877600-44881200	Active TSS	Right Atrium	heart
44	chr10:44877800-44878000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr10:44877800-44878000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:44877800-44878000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr10:44877800-44878000	Flanking Active TSS	Ovary	ovary
48	chr10:44877800-44878000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:44877800-44878000	ZNF genes & repeats	Spleen	Spleen
50	chr10:44877800-44878200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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