Variant report

Variant	rs376709030
Chromosome Location	chr13:52406827-52406828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52388956..52389914-chr13:52406314..52407314,7	MCF-7	breast:
2	chr13:51699788..51700708-chr13:52406162..52406892,2	K562	blood:
3	chr13:52402539..52404938-chr13:52405246..52407174,2	MCF-7	breast:
4	chr13:52389353..52390463-chr13:52406266..52407235,5	MCF-7	breast:
5	chr13:52008930..52009585-chr13:52406627..52407213,2	MCF-7	breast:
6	chr13:52405263..52408313-chr13:52419489..52422103,3	MCF-7	breast:
7	chr13:52389477..52391775-chr13:52406707..52408443,2	MCF-7	breast:
8	chr13:52406800..52409104-chr13:52702161..52704038,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197168	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv900081	chr13:52406404-52426096	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52393600-52418600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52401200-52407600	Weak transcription	Lung	lung
3	chr13:52401600-52419200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr13:52402800-52412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:52404400-52410200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:52404800-52413800	Weak transcription	Fetal Intestine Small	intestine
7	chr13:52405600-52407400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr13:52406000-52407000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:52406000-52407000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr13:52406000-52407000	Enhancers	Fetal Heart	heart
11	chr13:52406000-52407400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr13:52406000-52409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:52406200-52407000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:52406200-52407000	Enhancers	Left Ventricle	heart
15	chr13:52406200-52407200	Enhancers	Primary B cells from cord blood	blood
16	chr13:52406200-52407200	Enhancers	Primary B cells from peripheral blood	blood
17	chr13:52406200-52407200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr13:52406200-52407200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:52406200-52408200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:52406200-52409200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr13:52406400-52407000	Enhancers	GM12878-XiMat	blood
22	chr13:52406400-52407400	Enhancers	Primary hematopoietic stem cells	blood
23	chr13:52406600-52407000	Enhancers	Stomach Smooth Muscle	stomach
24	chr13:52406600-52414200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:52406800-52408000	Weak transcription	Primary T cells from cord blood	blood
26	chr13:52406800-52408000	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links