Variant report

Variant	rs376738299
Chromosome Location	chr4:158558168-158558169
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:158558064-158558207	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr4:158558065-158558200	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000249275	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020294	chr4:157722712-158691771	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv537313	chr4:157722712-158691771	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv595805	chr4:158535671-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv461695	chr4:158540375-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv595806	chr4:158540375-158564280	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv880461	chr4:158540375-158570410	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv881105	chr4:158541687-158570410	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv880680	chr4:158546648-158576701	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1024128	chr4:158549747-158561859	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv470086	chr4:158550241-158579066	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437448	chr4:158550319-158597491	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv1025774	chr4:158550949-158561859	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	nsv1026954	chr4:158551136-158594600	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3467449	chr4:158555623-158560570	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv3467447	chr4:158555672-158560544	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	esv3467448	chr4:158555688-158560531	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	esv3393713	chr4:158555742-158560461	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	esv3467450	chr4:158555756-158560459	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	esv3394242	chr4:158556927-158559875	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	esv1507603	chr4:158558167-158558168	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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