Variant report

Variant	rs376839773
Chromosome Location	chr5:36876926-36876927
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51057662..51059502-chr5:36875365..36877060,2	MCF-7	breast:
2	chr16:284664..285484-chr5:36876389..36877358,2	Hela-S3	cervix:
3	chr12:123717391..123717932-chr5:36876032..36877000,2	Hela-S3	cervix:
4	chr5:36876650..36877236-chr7:99933531..99934342,2	Hela-S3	cervix:
5	chr2:88314948..88316394-chr5:36876338..36877247,3	Hela-S3	cervix:
6	chr5:36860992..36862691-chr5:36875759..36878440,2	K562	blood:
7	chr11:62554095..62554682-chr5:36876746..36877433,2	Hela-S3	cervix:
8	chr5:36876413..36877387-chr6:32939757..32940537,2	Hela-S3	cervix:
9	chr5:36875375..36878248-chr5:37375352..37377665,2	K562	blood:
10	chr3:128444867..128445573-chr5:36876639..36877272,2	Hela-S3	cervix:
11	chr13:99228841..99229685-chr5:36876628..36877223,2	Hela-S3	cervix:
12	chr12:122907836..122908689-chr5:36876906..36877771,2	Hela-S3	cervix:
13	chr1:43232442..43232964-chr5:36876741..36877440,2	Hela-S3	cervix:
14	chr17:79008801..79009359-chr5:36876376..36876943,2	Hela-S3	cervix:
15	chr5:36876342..36877209-chrX:153626319..153627100,2	Hela-S3	cervix:
16	chr17:41277189..41278053-chr5:36876513..36877425,3	NB4	blood:
17	chr16:25269142..25270109-chr5:36876525..36877151,2	Hela-S3	cervix:
18	chr5:36722181..36727364-chr5:36874838..36878996,5	MCF-7	breast:
19	chr2:10262864..10263458-chr5:36876574..36877166,2	NB4	blood:
20	chr17:77812741..77813244-chr5:36876363..36877074,2	NB4	blood:
21	chr17:57915027..57916783-chr5:36875321..36877865,2	MCF-7	breast:
22	chr10:102820738..102821464-chr5:36876624..36877148,2	Hela-S3	cervix:
23	chr5:36876363..36877049-chr7:39989868..39990637,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000121716	Chromatin interaction
ENSG00000222724	Chromatin interaction
ENSG00000273162	Chromatin interaction
ENSG00000130921	Chromatin interaction
ENSG00000175866	Chromatin interaction
ENSG00000164008	Chromatin interaction
ENSG00000155592	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000167930	Chromatin interaction
ENSG00000272103	Chromatin interaction
ENSG00000117385	Chromatin interaction
ENSG00000102572	Chromatin interaction
ENSG00000224418	Chromatin interaction
ENSG00000012048	Chromatin interaction
ENSG00000250155	Chromatin interaction
ENSG00000141582	Chromatin interaction
ENSG00000250455	Chromatin interaction
ENSG00000051825	Chromatin interaction
ENSG00000198496	Chromatin interaction
ENSG00000242294	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000171848	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000269176	Chromatin interaction
ENSG00000272752	Chromatin interaction
ENSG00000065883	Chromatin interaction
ENSG00000075785	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	esv3426261	chr5:36876045-36878243	Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36872800-36881400	Active TSS	GM12878-XiMat	blood
2	chr5:36873400-36879400	Active TSS	Ovary	ovary
3	chr5:36874000-36878800	Active TSS	Psoas Muscle	Psoas
4	chr5:36874000-36879400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:36874000-36879400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr5:36874000-36879400	Active TSS	Right Atrium	heart
7	chr5:36874200-36879200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr5:36874200-36879800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:36874400-36879800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:36874400-36880000	Active TSS	Fetal Brain Female	brain
11	chr5:36874600-36879200	Active TSS	Fetal Muscle Trunk	muscle
12	chr5:36874600-36879400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr5:36874600-36879400	Active TSS	Fetal Muscle Leg	muscle
14	chr5:36874600-36879400	Active TSS	Right Ventricle	heart
15	chr5:36874600-36879600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:36874600-36879800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:36874800-36878200	Active TSS	Fetal Brain Male	brain
18	chr5:36874800-36878400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:36874800-36878800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr5:36874800-36878800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:36874800-36879000	Active TSS	Left Ventricle	heart
22	chr5:36874800-36879200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:36874800-36879200	Active TSS	H9 Cell Line	embryonic stem cell
24	chr5:36874800-36879400	Active TSS	Aorta	Aorta
25	chr5:36874800-36879600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:36874800-36879600	Active TSS	HSMMtube	muscle
27	chr5:36874800-36879800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:36874800-36879800	Active TSS	NHDF-Ad	bronchial
29	chr5:36874800-36880400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:36874800-36881000	Active TSS	K562	blood
31	chr5:36875000-36878400	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr5:36875000-36878400	Active TSS	Brain Anterior Caudate	brain
33	chr5:36875000-36878400	Active TSS	Fetal Heart	heart
34	chr5:36875000-36878400	Active TSS	Rectal Smooth Muscle	rectum
35	chr5:36875000-36878400	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr5:36875000-36878600	Active TSS	Brain Substantia Nigra	brain
37	chr5:36875000-36878800	Active TSS	Brain Angular Gyrus	brain
38	chr5:36875000-36879400	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr5:36875000-36879400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:36875000-36879400	Active TSS	Fetal Intestine Small	intestine
41	chr5:36875000-36879400	Active TSS	Fetal Stomach	stomach
42	chr5:36875000-36879400	Active TSS	HSMM	muscle
43	chr5:36875000-36879600	Active TSS	Muscle Satellite Cultured Cells	--
44	chr5:36875000-36879800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:36875000-36879800	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr5:36875000-36880000	Active TSS	NHLF	lung
47	chr5:36875000-36880600	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr5:36875000-36881000	Active TSS	HMEC	breast
49	chr5:36875200-36878000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:36875200-36878000	Active TSS	Gastric	stomach

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