Variant report

Variant	rs376858405
Chromosome Location	chr4:15607371-15607372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15599091..15600880-chr4:15606438..15609058,2	K562	blood:
2	chr4:15606192..15608992-chr4:15609587..15612464,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv12941	chr4:15606201-15607407	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
7	esv3464781	chr4:15607348-15613955	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3464782	chr4:15607355-15613914	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
2	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
3	chr4:15565400-15612600	Weak transcription	Brain Substantia Nigra	brain
4	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
5	chr4:15565600-15611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:15568400-15655600	Weak transcription	Gastric	stomach
7	chr4:15575200-15618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:15587200-15612600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:15589800-15621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:15590000-15615600	Weak transcription	Lung	lung
11	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:15593800-15621200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:15594000-15609200	Weak transcription	Psoas Muscle	Psoas
14	chr4:15594600-15617800	Weak transcription	Right Ventricle	heart
15	chr4:15595400-15614000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:15595800-15611400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:15596000-15608000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:15596000-15612800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:15596600-15616400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:15596800-15610000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:15597200-15620600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr4:15598400-15608800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:15598600-15607400	Strong transcription	NHDF-Ad	bronchial
24	chr4:15598600-15607800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:15598600-15611200	Strong transcription	HSMM	muscle
26	chr4:15599200-15607400	Strong transcription	Fetal Lung	lung
27	chr4:15599600-15610000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:15600600-15620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
30	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
31	chr4:15601600-15607600	Strong transcription	Osteobl	bone
32	chr4:15602000-15607600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:15602000-15607600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr4:15602200-15607600	Strong transcription	Liver	Liver
36	chr4:15602200-15609200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:15602200-15621200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:15602400-15612600	Weak transcription	Brain Angular Gyrus	brain
39	chr4:15602400-15615600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:15602600-15607400	Strong transcription	Fetal Kidney	kidney
41	chr4:15602600-15615800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
43	chr4:15602800-15607400	Strong transcription	NH-A	brain
44	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:15603200-15607400	Strong transcription	Fetal Thymus	thymus
46	chr4:15603200-15607600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:15603200-15608000	Strong transcription	Dnd41	blood
48	chr4:15603600-15607400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:15603800-15626800	Weak transcription	NHLF	lung
50	chr4:15604000-15607400	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links