Variant report

Variant	rs376864375
Chromosome Location	chr2:74012196-74012197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr2:74012043-74012498	GM12878	blood:	n/a	n/a
2	IRF4	chr2:74011725-74012298	GM12878	blood:	n/a	n/a
3	POU2F2	chr2:74012073-74012451	GM12891	blood:	n/a	chr2:74012124-74012137
4	ZBTB33	chr2:74012079-74012444	GM12878	blood:	n/a	n/a
5	BATF	chr2:74012103-74012308	GM12878	blood:	n/a	n/a
6	FOSL2	chr2:74012176-74012583	HepG2	liver:	n/a	n/a
7	SIN3AK20	chr2:74012175-74012317	HepG2	liver:	n/a	n/a
8	POU2F2	chr2:74012066-74012491	GM12878	blood:	n/a	chr2:74012124-74012137
9	FOXA1	chr2:74011987-74012292	HepG2	liver:	n/a	n/a
10	BCL11A	chr2:74012160-74012430	GM12878	blood:	n/a	n/a
11	ZBTB33	chr2:74012044-74012380	K562	blood:	n/a	n/a
12	TCF12	chr2:74012092-74012419	GM12878	blood:	n/a	chr2:74012101-74012110
13	PAX5	chr2:74012024-74012305	GM12878	blood:	n/a	n/a
14	IRF4	chr2:74012097-74012561	GM12878	blood:	n/a	n/a
15	POU2F2	chr2:74012176-74012396	GM12878	blood:	n/a	n/a
16	ZBTB33	chr2:74012064-74012361	HepG2	liver:	n/a	n/a
17	PBX3	chr2:74012111-74012232	GM12878	blood:	n/a	n/a
18	PBX3	chr2:74011692-74012424	GM12878	blood:	n/a	n/a
19	FOSL2	chr2:74012130-74012364	HepG2	liver:	n/a	n/a
20	GATA2	chr2:74011948-74012198	K562	blood:	n/a	n/a
21	ZBTB33	chr2:74012181-74012426	K562	blood:	n/a	n/a
22	SIX5	chr2:74012041-74012422	K562	blood:	n/a	n/a
23	TCF3	chr2:74011963-74012404	GM12878	blood:	n/a	n/a
24	SP1	chr2:74012086-74012351	GM12878	blood:	n/a	n/a
25	SIX5	chr2:74012167-74012390	K562	blood:	n/a	n/a
26	JUND	chr2:74012038-74012356	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DUSP11	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1013385	chr2:73822056-74041441	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv834260	chr2:73906106-74076520	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv1000675	chr2:73919185-74038946	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv2780	chr2:73994168-74057248	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv1828210	chr2:74005068-74038451	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv1798760	chr2:74008555-74037432	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1796755	chr2:74008755-74037232	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1829180	chr2:74008755-74040242	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv10024	chr2:74009680-74037260	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv12664	chr2:74009707-74039385	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv471530	chr2:74009713-74037182	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3371250	chr2:74010144-74014742	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
16	esv1794852	chr2:74010258-74036308	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1831787	chr2:74010258-74036308	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv1795724	chr2:74010341-74036605	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv1830089	chr2:74010341-74036605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv1830247	chr2:74010341-74036605	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
21	esv1803581	chr2:74010541-74038731	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv1825297	chr2:74010541-74040242	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv1810185	chr2:74011272-74036605	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
24	esv1813573	chr2:74011272-74036605	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv471418	chr2:74011316-74044274	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv482051	chr2:74011316-74044274	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	esv1812355	chr2:74011472-74036405	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	esv1810834	chr2:74011472-74038731	Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv1811898	chr2:74011472-74043123	Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	esv3388983	chr2:74011544-74016342	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
31	nsv979023	chr2:74011888-74015199	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links