Variant report

Variant	rs3768652
Chromosome Location	chr2:152725937-152725938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12693152	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[GIH][hapmap];0.94[LWK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12693154	1.00[ASW][hapmap];0.88[CEU][hapmap];0.86[GIH][hapmap];0.91[LWK][hapmap];0.92[TSI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12693157	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13382957	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13410490	0.86[GIH][hapmap];0.84[EUR][1000 genomes]
rs13424831	0.86[GIH][hapmap];0.92[TSI][hapmap];0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs35174334	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs35409582	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35581549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726094	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6744905	1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67510656	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7597660	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7609069	0.97[EUR][1000 genomes]
rs9646794	0.86[GIH][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3693431	chr2:152683731-152981827	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv875287	chr2:152714680-153110573	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv875288	chr2:152716628-153183646	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv875289	chr2:152720030-153183646	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152695000-152732600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:152699800-152742000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:152700000-152731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:152700000-152732600	Weak transcription	Right Atrium	heart
5	chr2:152713000-152747800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:152722000-152736200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:152722400-152735000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:152723000-152748200	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:152724200-152726200	Weak transcription	Brain Anterior Caudate	brain
10	chr2:152724800-152726800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:152725600-152726000	Enhancers	Fetal Brain Male	brain
12	chr2:152725600-152726200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:152725600-152726200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:152725600-152726400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:152725800-152726000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:152725800-152726200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:152725800-152726200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:152725800-152726200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:152725800-152726400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:152725800-152726400	Enhancers	Aorta	Aorta
21	chr2:152725800-152726800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:152725800-152727200	Strong transcription	Fetal Brain Female	brain
23	chr2:152725800-152729400	Strong transcription	HepG2	liver

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