Variant report

Variant	rs3769233
Chromosome Location	chr2:173871247-173871248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173870759..173874382-chr2:173875343..173878397,4	MCF-7	breast:
2	chr2:173871014..173872859-chr2:173873353..173875998,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10497388	0.91[AMR][1000 genomes]
rs10497389	0.91[AMR][1000 genomes]
rs12616563	1.00[CEU][hapmap]
rs1446981	0.88[CHB][hapmap]
rs1530591	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16861137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16861148	1.00[CEU][hapmap]
rs16861173	1.00[CEU][hapmap]
rs2121483	1.00[CEU][hapmap]
rs2166588	1.00[CEU][hapmap]
rs2242079	1.00[CEU][hapmap]
rs2305461	1.00[CEU][hapmap]
rs3754754	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3769228	1.00[CEU][hapmap]
rs3769229	1.00[CEU][hapmap]
rs3769231	1.00[CEU][hapmap]
rs3769237	0.95[ASN][1000 genomes]
rs3820840	1.00[CEU][hapmap]
rs3820841	1.00[CEU][hapmap]
rs3820842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896055	0.91[AMR][1000 genomes]
rs72907592	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs768030	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173835800-173886800	Weak transcription	Lung	lung
2	chr2:173856000-173885200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:173856200-173882400	Weak transcription	Left Ventricle	heart
4	chr2:173856200-173892600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173860800-173877800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:173861000-173888000	Weak transcription	Fetal Stomach	stomach
7	chr2:173862200-173881800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173862200-173883600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:173862800-173874000	Weak transcription	Small Intestine	intestine
10	chr2:173863400-173871600	Weak transcription	Right Atrium	heart
11	chr2:173867800-173880800	Weak transcription	Liver	Liver
12	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:173868200-173875400	Weak transcription	Pancreas	Pancrea
14	chr2:173868200-173878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:173868600-173892200	Weak transcription	Fetal Intestine Large	intestine
16	chr2:173869000-173873000	Weak transcription	HepG2	liver
17	chr2:173871000-173873600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:173871000-173881200	Weak transcription	Ovary	ovary
19	chr2:173871000-173884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:173871000-173886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:173871200-173881000	Weak transcription	Fetal Heart	heart

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