Variant report

Variant	rs3769257
Chromosome Location	chr2:173793454-173793455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12615974	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173782600-173796000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:173786400-173794800	Weak transcription	Fetal Intestine Large	intestine
3	chr2:173786800-173793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:173786800-173794600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:173786800-173794600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:173786800-173794600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:173788200-173796400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:173789200-173799400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:173789600-173794600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:173789600-173795200	Weak transcription	Brain Substantia Nigra	brain
11	chr2:173792200-173794000	Enhancers	Fetal Muscle Leg	muscle
12	chr2:173792200-173796200	Enhancers	Colon Smooth Muscle	Colon
13	chr2:173792400-173793800	Enhancers	Stomach Mucosa	stomach
14	chr2:173792400-173794600	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:173792600-173793600	Flanking Active TSS	Liver	Liver
16	chr2:173792600-173793600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:173792600-173793600	Active TSS	Right Atrium	heart
18	chr2:173792600-173793800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:173792600-173793800	Active TSS	Pancreas	Pancrea
20	chr2:173792600-173794800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:173792800-173793800	Flanking Active TSS	Ovary	ovary
22	chr2:173792800-173793800	Flanking Active TSS	HUVEC	blood vessel
23	chr2:173792800-173796000	Weak transcription	A549	lung
24	chr2:173792800-173796200	Weak transcription	Left Ventricle	heart
25	chr2:173792800-173796600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:173793000-173793600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr2:173793000-173793600	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr2:173793000-173793600	Weak transcription	Gastric	stomach
29	chr2:173793000-173794400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:173793000-173795400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr2:173793000-173795600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr2:173793000-173796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:173793000-173796000	Weak transcription	Fetal Intestine Small	intestine
34	chr2:173793000-173796600	Enhancers	HSMMtube	muscle
35	chr2:173793200-173793600	Weak transcription	Brain Anterior Caudate	brain
36	chr2:173793200-173793800	Enhancers	Fetal Kidney	kidney
37	chr2:173793200-173794000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:173793200-173794000	Enhancers	Osteobl	bone
39	chr2:173793200-173794200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:173793200-173794600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr2:173793200-173794600	Weak transcription	Fetal Heart	heart
42	chr2:173793200-173794800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:173793200-173795600	Enhancers	Hela-S3	cervix
44	chr2:173793200-173796000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr2:173793200-173796200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:173793400-173793600	Flanking Active TSS	Fetal Stomach	stomach
47	chr2:173793400-173793800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:173793400-173793800	Enhancers	NH-A	brain
49	chr2:173793400-173794200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:173793400-173794400	Weak transcription	Adipose Nuclei	Adipose

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