Variant report

Variant	rs376926574
Chromosome Location	chr8:104091060-104091061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104090004..104092160-chr8:104092634..104094909,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv891247	chr8:104090979-104121862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104066800-104091200	Weak transcription	Stomach Mucosa	stomach
2	chr8:104080400-104091200	Weak transcription	Small Intestine	intestine
3	chr8:104083600-104093000	Weak transcription	Placenta	Placenta
4	chr8:104087600-104093200	Weak transcription	Brain Germinal Matrix	brain
5	chr8:104088200-104091200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:104088400-104091600	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:104088600-104092000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:104089000-104091600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr8:104089200-104091200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:104089200-104091200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:104089400-104091600	Enhancers	Liver	Liver
12	chr8:104089800-104091200	Enhancers	Colon Smooth Muscle	Colon
13	chr8:104090000-104091200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:104090200-104091400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr8:104090200-104091400	Enhancers	NHEK	skin
16	chr8:104090200-104091600	Enhancers	Primary B cells from cord blood	blood
17	chr8:104090200-104091600	Enhancers	K562	blood
18	chr8:104090400-104091200	Weak transcription	Spleen	Spleen
19	chr8:104090400-104091400	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr8:104090400-104091400	Weak transcription	Pancreas	Pancrea
21	chr8:104090400-104091600	Enhancers	Fetal Stomach	stomach
22	chr8:104090400-104091800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr8:104090400-104093000	Weak transcription	Gastric	stomach
24	chr8:104090400-104093000	Weak transcription	Lung	lung
25	chr8:104090600-104091200	Active TSS	Right Atrium	heart
26	chr8:104090600-104091200	Active TSS	Osteobl	bone
27	chr8:104090600-104091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:104090600-104091400	Active TSS	Brain Angular Gyrus	brain
29	chr8:104090600-104091400	Active TSS	Colonic Mucosa	Colon
30	chr8:104090600-104091400	Flanking Active TSS	GM12878-XiMat	blood
31	chr8:104090600-104091400	Flanking Active TSS	HUVEC	blood vessel
32	chr8:104090600-104091600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr8:104090800-104091200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:104090800-104091200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr8:104090800-104091200	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr8:104090800-104091200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:104090800-104091200	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr8:104090800-104091200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:104090800-104091200	Active TSS	Duodenum Mucosa	Duodenum
40	chr8:104090800-104091200	Flanking Active TSS	Fetal Lung	lung
41	chr8:104090800-104091200	Weak transcription	Left Ventricle	heart
42	chr8:104090800-104091200	Active TSS	Right Ventricle	heart
43	chr8:104090800-104091200	Active TSS	NHLF	lung
44	chr8:104090800-104091400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:104090800-104091400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:104090800-104091400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr8:104090800-104091400	Active TSS	Aorta	Aorta
48	chr8:104090800-104091400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr8:104090800-104091400	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr8:104090800-104091400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links