Variant report

Variant	rs376942023
Chromosome Location	chr11:26926677-26926678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv983219	chr11:26926565-26932064	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26913800-26927200	Weak transcription	Esophagus	oesophagus
2	chr11:26923000-26927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:26924200-26927200	Enhancers	Colon Smooth Muscle	Colon
4	chr11:26925000-26927200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:26925000-26927200	Enhancers	Fetal Lung	lung
6	chr11:26925200-26927200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:26925200-26927200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:26925200-26927400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:26925200-26928000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:26925400-26927000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:26925400-26927000	Enhancers	Rectal Smooth Muscle	rectum
12	chr11:26925400-26927400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:26925600-26927200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:26925600-26927400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:26925800-26927000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:26926000-26927000	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:26926200-26927200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:26926200-26927200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr11:26926400-26926800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:26926400-26926800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:26926400-26931600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links