Variant report

Variant	rs3769744
Chromosome Location	chr2:99001784-99001785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98612055..98614236-chr2:99000811..99003149,2	MCF-7	breast:
2	chr2:98316367..98317238-chr2:99001255..99001809,2	MCF-7	breast:
3	chr2:98911862..98912813-chr2:99001255..99002233,2	K562	blood:
4	chr2:98995038..98998457-chr2:99001484..99003590,3	K562	blood:
5	chr2:98326483..98327354-chr2:99001439..99001970,2	K562	blood:
6	chr2:98991699..98995424-chr2:99000977..99003999,3	K562	blood:
7	chr2:98356777..98357774-chr2:99001218..99001971,3	MCF-7	breast:
8	chr2:98422798..98423854-chr2:99001197..99002160,5	K562	blood:
9	chr2:98423082..98423843-chr2:99001386..99002120,2	MCF-7	breast:
10	chr2:98316336..98317275-chr2:99001207..99002178,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6727412	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1008645	chr2:98915767-99010743	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1013617	chr2:98943377-99004173	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98990600-99007200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:98996800-99003000	Weak transcription	Fetal Brain Female	brain
3	chr2:99000200-99011000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:99001000-99001800	Enhancers	Fetal Brain Male	brain
5	chr2:99001400-99001800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:99001400-99001800	Enhancers	Liver	Liver
7	chr2:99001400-99001800	Enhancers	Brain Anterior Caudate	brain
8	chr2:99001400-99001800	Enhancers	Stomach Mucosa	stomach
9	chr2:99001600-99002200	Weak transcription	Right Atrium	heart
10	chr2:99001600-99003800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links