Variant report

Variant	rs3770036
Chromosome Location	chr2:178606651-178606652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13421315	0.89[ASN][1000 genomes]
rs13421415	0.89[ASN][1000 genomes]
rs1438040	0.82[ASN][1000 genomes]
rs1530035	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1530036	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3754996	0.91[ASN][1000 genomes]
rs3770044	0.92[ASN][1000 genomes]
rs3770045	0.91[ASN][1000 genomes]
rs6706739	0.89[ASN][1000 genomes]
rs6735387	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7563242	0.88[ASN][1000 genomes]
rs7605091	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178597800-178610200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:178603400-178616000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:178604600-178609400	Enhancers	Fetal Kidney	kidney
4	chr2:178606000-178607200	Weak transcription	Fetal Lung	lung
5	chr2:178606000-178617800	Weak transcription	Ovary	ovary
6	chr2:178606400-178606800	Weak transcription	Fetal Stomach	stomach
7	chr2:178606600-178607600	Enhancers	Fetal Muscle Leg	muscle
8	chr2:178606600-178612000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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