Variant report

Variant	rs3770138
Chromosome Location	chr2:182325907-182325908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10930969	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17290693	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes]
rs2305588	0.92[LWK][hapmap]
rs2305589	0.88[AFR][1000 genomes]
rs2305590	0.88[AFR][1000 genomes]
rs3755021	0.92[MKK][hapmap]
rs3770120	0.92[LWK][hapmap]
rs3770124	0.96[AFR][1000 genomes]
rs3770126	0.81[MKK][hapmap]
rs3770136	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv834476	chr2:182179249-182360259	Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182321200-182327000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:182321400-182326600	Active TSS	Primary T killer memory cells from peripheral blood	blood
3	chr2:182321600-182326200	Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr2:182321600-182326200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:182321600-182327200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr2:182321600-182327400	Active TSS	Thymus	Thymus
7	chr2:182321800-182327000	Active TSS	GM12878-XiMat	blood
8	chr2:182321800-182327200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:182322000-182326000	Active TSS	Fetal Thymus	thymus
10	chr2:182322000-182327000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr2:182322200-182330800	Transcr. at gene 5' and 3'	Dnd41	blood
12	chr2:182323200-182326200	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr2:182323400-182326200	Active TSS	Duodenum Mucosa	Duodenum
14	chr2:182323400-182330400	Weak transcription	HMEC	breast
15	chr2:182323400-182332600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:182323600-182329600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr2:182324200-182326600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr2:182324400-182326000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:182324400-182326600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr2:182324400-182410400	Weak transcription	NHLF	lung
21	chr2:182324600-182326600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr2:182324600-182327200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr2:182324600-182328000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:182324600-182330600	Weak transcription	NH-A	brain
25	chr2:182324600-182336400	Weak transcription	Small Intestine	intestine
26	chr2:182324600-182337600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:182324600-182340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:182324600-182360400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:182324800-182327400	Active TSS	Primary T cells fromperipheralblood	blood
30	chr2:182324800-182330000	Weak transcription	NHDF-Ad	bronchial
31	chr2:182324800-182330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:182324800-182330400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:182325000-182326200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:182325200-182330000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr2:182325400-182326200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:182325400-182327200	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:182325600-182326000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr2:182325600-182326200	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
39	chr2:182325600-182326200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr2:182325600-182326200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:182325600-182326200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:182325600-182326600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr2:182325600-182328400	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr2:182325800-182326200	Active TSS	Colonic Mucosa	Colon
45	chr2:182325800-182326200	Active TSS	Rectal Smooth Muscle	rectum
46	chr2:182325800-182326200	Enhancers	Spleen	Spleen
47	chr2:182325800-182326200	Transcr. at gene 5' and 3'	HSMMtube	muscle
48	chr2:182325800-182326400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
49	chr2:182325800-182326400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr2:182325800-182326600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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