Variant report

Variant	rs377019772
Chromosome Location	chr7:140623531-140623532
allele	-/ACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:140572911..140575551-chr7:140622620..140624458,2	MCF-7	breast:
2	chr7:140621971..140623569-chr7:140707032..140709391,2	MCF-7	breast:
3	chr7:140621726..140624133-chr7:141216889..141219173,2	K562	blood:
4	chr7:140532465..140534919-chr7:140622566..140624357,2	K562	blood:
5	chr7:140395267..140398426-chr7:140622802..140626309,6	K562	blood:
6	chr7:140621424..140625988-chr7:140712136..140716057,7	K562	blood:
7	chr7:140621424..140625828-chr7:140713150..140716057,6	K562	blood:
8	chr7:140395805..140398704-chr7:140623265..140626329,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000090263	Chromatin interaction
ENSG00000090266	Chromatin interaction
ENSG00000240889	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv3422481	chr7:140623508-140626056	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140620200-140625400	Active TSS	GM12878-XiMat	blood
2	chr7:140620800-140625200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:140622000-140623600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:140622000-140625400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:140622200-140623800	Flanking Active TSS	Dnd41	blood
6	chr7:140622200-140625600	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr7:140622400-140623800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:140622400-140624000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:140622600-140623800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:140622600-140624000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr7:140622600-140624000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr7:140622600-140624000	Active TSS	Right Atrium	heart
13	chr7:140622600-140625200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:140622600-140625200	Active TSS	Fetal Intestine Large	intestine
15	chr7:140622600-140625400	Active TSS	Aorta	Aorta
16	chr7:140622600-140625400	Active TSS	Colonic Mucosa	Colon
17	chr7:140622600-140625400	Active TSS	Fetal Brain Female	brain
18	chr7:140622600-140625600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:140622800-140623600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr7:140622800-140624800	Active TSS	HMEC	breast
21	chr7:140622800-140625200	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr7:140622800-140625400	Active TSS	NHLF	lung
23	chr7:140622800-140625600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:140622800-140625600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:140622800-140625600	Active TSS	K562	blood
26	chr7:140623000-140623600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:140623000-140623600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:140623000-140623600	Active TSS	Brain Germinal Matrix	brain
29	chr7:140623000-140623600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr7:140623000-140623600	Flanking Active TSS	Fetal Kidney	kidney
31	chr7:140623000-140623600	Flanking Active TSS	NHEK	skin
32	chr7:140623000-140623800	Flanking Active TSS	HUVEC	blood vessel
33	chr7:140623000-140625000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:140623000-140625200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:140623000-140625200	Active TSS	A549	lung
36	chr7:140623000-140625200	Active TSS	Hela-S3	cervix
37	chr7:140623000-140625400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:140623000-140625600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr7:140623000-140625600	Active TSS	Brain Anterior Caudate	brain
40	chr7:140623000-140625600	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr7:140623200-140623600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:140623200-140623600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr7:140623200-140623600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:140623200-140623600	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr7:140623200-140623600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr7:140623200-140623600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr7:140623200-140623600	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr7:140623200-140623600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr7:140623200-140623600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr7:140623200-140623600	Flanking Active TSS	HSMM	muscle

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