Variant report

Variant	rs377021830
Chromosome Location	chr1:97771642-97771643
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533039	chr1:97665736-98343102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv871536	chr1:97744048-97771947	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv869751	chr1:97749598-97790476	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
7	nsv933414	chr1:97770563-97772096	Weak transcription Strong transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97720600-97772000	Weak transcription	Ovary	ovary
2	chr1:97724000-97773200	Weak transcription	Lung	lung
3	chr1:97745000-97773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:97745200-97771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:97745200-97773400	Weak transcription	NHDF-Ad	bronchial
6	chr1:97753400-97773200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:97754200-97773200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:97756000-97772400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:97756800-97773200	Weak transcription	Small Intestine	intestine
10	chr1:97757800-97773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:97757800-97773800	Weak transcription	Osteobl	bone
12	chr1:97759200-97772200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:97759800-97776000	Weak transcription	Pancreas	Pancrea
14	chr1:97760000-97772600	Weak transcription	Thymus	Thymus
15	chr1:97760200-97772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:97762800-97772200	Weak transcription	HSMMtube	muscle
17	chr1:97767200-97772000	Strong transcription	Liver	Liver
18	chr1:97768400-97772200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:97769200-97781800	Weak transcription	NHLF	lung
20	chr1:97769400-97772000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:97769600-97771800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:97769600-97772000	Strong transcription	Primary T cells from cord blood	blood
23	chr1:97769600-97772200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:97769800-97771800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr1:97769800-97772000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:97769800-97772000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr1:97769800-97772000	Strong transcription	Dnd41	blood
28	chr1:97770400-97772000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr1:97770400-97772200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:97770400-97772600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:97770400-97797600	Weak transcription	HSMM	muscle
32	chr1:97770600-97772800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:97771000-97772600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:97771000-97772600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr1:97771000-97773400	Weak transcription	Adipose Nuclei	Adipose
36	chr1:97771000-97773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:97771000-97774400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:97771000-97777000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:97771000-97782400	Weak transcription	Primary B cells from cord blood	blood
40	chr1:97771400-97772000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:97771400-97781400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:97771600-97771800	Enhancers	Brain Anterior Caudate	brain
43	chr1:97771600-97771800	Enhancers	Left Ventricle	heart
44	chr1:97771600-97772000	Strong transcription	Primary hematopoietic stem cells	blood
45	chr1:97771600-97772000	Enhancers	Brain Angular Gyrus	brain
46	chr1:97771600-97772000	Enhancers	Fetal Brain Male	brain

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