Variant report

Variant	rs377024595
Chromosome Location	chr3:51129734-51129735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3447639	chr3:51129523-51158383	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51120600-51134400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:51120800-51143000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:51121000-51143000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:51121000-51145200	Weak transcription	Fetal Brain Male	brain
5	chr3:51122000-51143000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:51122800-51143000	Weak transcription	Fetal Brain Female	brain
7	chr3:51123000-51132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:51124200-51143000	Weak transcription	Brain Germinal Matrix	brain
9	chr3:51125400-51143000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:51125400-51143200	Weak transcription	Brain Substantia Nigra	brain
11	chr3:51125800-51134200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:51128200-51132000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:51128200-51143800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:51128400-51142800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:51129200-51129800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:51129200-51129800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr3:51129200-51129800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:51129200-51129800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:51129400-51129800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:51129400-51129800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:51129600-51129800	Enhancers	Stomach Mucosa	stomach
22	chr3:51129600-51143200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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