Variant report

Variant	rs377050799
Chromosome Location	chr21:45628795-45628796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:45625863-45629217	GM12878	blood:	n/a	n/a
2	POLR2A	chr21:45625793-45629546	PFSK-1	brain:	n/a	n/a
3	MAX	chr21:45627483-45629071	NB4	blood:	n/a	n/a
4	POLR2A	chr21:45626028-45628809	GM12892	blood:	n/a	n/a
5	JUN	chr21:45626344-45628914	K562	blood:	n/a	chr21:45627641-45627651 chr21:45627641-45627651 chr21:45627641-45627651 chr21:45627642-45627650 chr21:45627642-45627649 chr21:45627641-45627651 chr21:45628409-45628418 chr21:45627642-45627650 chr21:45626982-45626993 chr21:45627640-45627652
6	EBF1	chr21:45626545-45629017	GM12878	blood:	n/a	chr21:45627861-45627870
7	ZEB1	chr21:45627939-45629264	GM12878	blood:	n/a	n/a
8	POLR2A	chr21:45625968-45629043	GM12892	blood:	n/a	n/a
9	MTA3	chr21:45625931-45629275	GM12878	blood:	n/a	n/a
10	RCOR1	chr21:45625863-45629035	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:45621014..45624737-chr21:45625090..45629806,7	K562	blood:
2	chr21:45621014..45626357-chr21:45626432..45630019,5	K562	blood:
3	chr21:45625593..45629065-chr21:45717787..45720760,5	MCF-7	breast:
4	chr21:45555886..45558409-chr21:45626511..45629056,2	MCF-7	breast:
5	chr21:45590531..45598113-chr21:45625237..45630055,9	MCF-7	breast:
6	chr21:45619816..45631884-chr21:45656529..45663802,30	MCF-7	breast:
7	chr21:45620311..45631567-chr21:45651002..45670824,52	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232698	TF binding region
ENSG00000141959	Chromatin interaction
ENSG00000237604	Chromatin interaction
ENSG00000232010	Chromatin interaction
ENSG00000232124	Chromatin interaction
ENSG00000160221	Chromatin interaction
ENSG00000160223	Chromatin interaction
ENSG00000267913	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv913887	chr21:45344799-45670770	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1064420	chr21:45460089-45814986	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv544472	chr21:45460089-45814986	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv432155	chr21:45479055-45772388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv913897	chr21:45528919-45640139	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv1825445	chr21:45535566-45754936	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	esv1817474	chr21:45540607-45773102	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv533679	chr21:45551026-45768578	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
10	nsv913898	chr21:45555079-45941566	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
11	nsv428042	chr21:45560437-45848190	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
12	nsv913900	chr21:45577102-45640139	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv913901	chr21:45615741-45665330	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv913902	chr21:45615741-45709153	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	esv1798512	chr21:45619474-45629565	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv1834007	chr21:45619474-45629565	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv518543	chr21:45627976-45630608	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
18	nsv470906	chr21:45627976-45661343	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
19	nsv587739	chr21:45628374-45640629	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45622800-45629800	Enhancers	Placenta	Placenta
2	chr21:45623000-45629400	Enhancers	K562	blood
3	chr21:45623000-45629800	Enhancers	Fetal Muscle Leg	muscle
4	chr21:45624200-45628800	Enhancers	Fetal Stomach	stomach
5	chr21:45624600-45629200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr21:45625200-45629600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr21:45625400-45628800	Enhancers	NHLF	lung
8	chr21:45625400-45629000	Enhancers	Fetal Thymus	thymus
9	chr21:45625400-45629400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr21:45625400-45630200	Enhancers	Primary hematopoietic stem cells	blood
11	chr21:45625800-45628800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr21:45625800-45629200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr21:45625800-45629600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr21:45626000-45628800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr21:45626000-45628800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr21:45626000-45628800	Enhancers	Lung	lung
17	chr21:45626000-45628800	Enhancers	Spleen	Spleen
18	chr21:45626000-45629000	Enhancers	Adipose Nuclei	Adipose
19	chr21:45626000-45629000	Flanking Active TSS	GM12878-XiMat	blood
20	chr21:45626000-45629200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr21:45626000-45629400	Enhancers	Esophagus	oesophagus
22	chr21:45626200-45628800	Enhancers	Left Ventricle	heart
23	chr21:45626200-45629000	Enhancers	Right Ventricle	heart
24	chr21:45626200-45629000	Enhancers	NHEK	skin
25	chr21:45626400-45628800	Enhancers	Fetal Kidney	kidney
26	chr21:45626600-45629800	Enhancers	HUVEC	blood vessel
27	chr21:45626800-45629000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr21:45626800-45629000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr21:45626800-45629200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr21:45626800-45630600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr21:45627000-45629000	Enhancers	Brain Substantia Nigra	brain
32	chr21:45627000-45629000	Enhancers	HMEC	breast
33	chr21:45627000-45629200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
34	chr21:45627000-45629200	Enhancers	Stomach Mucosa	stomach
35	chr21:45627000-45629800	Enhancers	Brain Hippocampus Middle	brain
36	chr21:45627200-45628800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr21:45627200-45629000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr21:45627200-45631000	Enhancers	Primary B cells from cord blood	blood
39	chr21:45627400-45629000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr21:45627400-45629000	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr21:45627400-45629000	Enhancers	NHDF-Ad	bronchial
42	chr21:45627400-45629600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr21:45627400-45629600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr21:45627600-45628800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr21:45627600-45628800	Enhancers	Brain Anterior Caudate	brain
46	chr21:45627600-45628800	Enhancers	Osteobl	bone
47	chr21:45627600-45629600	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr21:45627600-45631600	Weak transcription	Gastric	stomach
49	chr21:45627800-45629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr21:45627800-45636600	Enhancers	Primary B cells from peripheral blood	blood

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