Variant report

Variant	rs3770772
Chromosome Location	chr2:37192607-37192608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37191677..37193362-chr2:37233119..37235779,2	K562	blood:
2	chr2:37186145..37190956-chr2:37191183..37194668,5	K562	blood:
3	chr2:37114816..37116390-chr2:37191550..37193356,2	MCF-7	breast:
4	chr2:37183661..37187179-chr2:37192061..37194972,3	MCF-7	breast:
5	chr2:37192443..37195662-chr2:37309226..37313144,4	K562	blood:
6	chr2:37170595..37172882-chr2:37190992..37193264,2	K562	blood:

Variant related genes	Relation type
ENSG00000008869	Chromatin interaction
ENSG00000252518	Chromatin interaction
ENSG00000152133	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17497197	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7424096	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	esv3440334	chr2:37192273-37194821	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	esv3344704	chr2:37192448-37195146	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37179200-37192800	Weak transcription	Lung	lung
2	chr2:37190200-37192800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr2:37191000-37192800	Enhancers	Spleen	Spleen
4	chr2:37191200-37192800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:37191200-37192800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:37191400-37192800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:37191600-37192800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:37191600-37192800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:37191600-37193200	Flanking Active TSS	Dnd41	blood
10	chr2:37191600-37194600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr2:37191600-37194600	Active TSS	NHLF	lung
12	chr2:37191800-37192800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:37191800-37192800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr2:37191800-37193000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr2:37191800-37193000	Active TSS	Right Atrium	heart
16	chr2:37191800-37193200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:37191800-37193200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:37191800-37193200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr2:37191800-37194000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:37191800-37194400	Active TSS	Esophagus	oesophagus
21	chr2:37191800-37194600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr2:37191800-37194600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:37191800-37194600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:37191800-37194600	Active TSS	Left Ventricle	heart
25	chr2:37191800-37195000	Active TSS	NHDF-Ad	bronchial
26	chr2:37192000-37192800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr2:37192000-37192800	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr2:37192000-37192800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr2:37192000-37192800	Flanking Active TSS	Hela-S3	cervix
30	chr2:37192000-37192800	Flanking Active TSS	HUVEC	blood vessel
31	chr2:37192000-37193000	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr2:37192000-37193000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr2:37192000-37193000	Flanking Active TSS	Fetal Lung	lung
34	chr2:37192000-37193200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr2:37192000-37193200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:37192000-37193200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr2:37192000-37194000	Active TSS	Colonic Mucosa	Colon
38	chr2:37192000-37194200	Active TSS	HSMM	muscle
39	chr2:37192000-37194400	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr2:37192000-37194400	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr2:37192000-37194400	Active TSS	NH-A	brain
42	chr2:37192000-37194800	Active TSS	Right Ventricle	heart
43	chr2:37192000-37195000	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr2:37192000-37195000	Active TSS	Psoas Muscle	Psoas
45	chr2:37192200-37192800	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr2:37192200-37192800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr2:37192200-37192800	Weak transcription	Gastric	stomach
48	chr2:37192200-37192800	Weak transcription	Pancreas	Pancrea
49	chr2:37192200-37192800	Flanking Active TSS	HepG2	liver
50	chr2:37192200-37193000	Flanking Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links