Variant report

Variant	rs3770820
Chromosome Location	chr2:36763620-36763621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36743424..36745842-chr2:36763620..36766499,2	K562	blood:
2	chr2:36762904..36765006-chr2:36789182..36790793,2	K562	blood:
3	chr2:36762825..36765434-chr2:36770286..36772381,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11681392	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12712507	0.82[EUR][1000 genomes]
rs3755197	0.80[ASN][1000 genomes]
rs3770821	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58198299	0.83[EUR][1000 genomes]
rs6721081	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72537468	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
3	chr2:36733200-36774200	Weak transcription	Fetal Thymus	thymus
4	chr2:36733400-36764400	Weak transcription	Pancreas	Pancrea
5	chr2:36739000-36778200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:36744800-36764200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:36747800-36766200	Weak transcription	Thymus	Thymus
8	chr2:36747800-36768800	Weak transcription	Colonic Mucosa	Colon
9	chr2:36747800-36774200	Weak transcription	Liver	Liver
10	chr2:36748000-36764400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:36748000-36764400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:36749600-36764200	Weak transcription	Brain Germinal Matrix	brain
13	chr2:36749600-36765000	Weak transcription	Fetal Brain Male	brain
14	chr2:36749600-36765200	Weak transcription	Right Ventricle	heart
15	chr2:36749800-36764200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:36749800-36764200	Weak transcription	Spleen	Spleen
17	chr2:36750000-36765200	Weak transcription	Gastric	stomach
18	chr2:36750800-36764400	Weak transcription	Esophagus	oesophagus
19	chr2:36750800-36783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:36751000-36764200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:36751200-36774200	Weak transcription	Psoas Muscle	Psoas
23	chr2:36751400-36764200	Weak transcription	Fetal Brain Female	brain
24	chr2:36751400-36764200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:36751600-36764400	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:36751600-36764400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:36752000-36776000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr2:36752800-36766400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:36753000-36764200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr2:36753800-36782600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:36754000-36764400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:36754200-36764200	Weak transcription	Left Ventricle	heart
33	chr2:36756400-36767400	Weak transcription	Primary T cells from cord blood	blood
34	chr2:36756400-36769600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:36757600-36769200	Strong transcription	Placenta	Placenta
36	chr2:36757800-36764400	Strong transcription	A549	lung
37	chr2:36758000-36764200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:36758000-36778400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:36758200-36764400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:36758200-36764400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr2:36758200-36766200	Weak transcription	Right Atrium	heart
42	chr2:36758200-36768200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:36758200-36771000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:36758400-36764400	Weak transcription	Brain Anterior Caudate	brain
45	chr2:36758400-36766400	Strong transcription	HSMM	muscle
46	chr2:36758400-36774200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr2:36758400-36779200	Weak transcription	Brain Angular Gyrus	brain
48	chr2:36758600-36764200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:36758600-36766200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr2:36758600-36770600	Weak transcription	Monocytes-CD14+_RO01746	blood

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