Variant report

Variant	rs3770873
Chromosome Location	chr2:36684907-36684908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36677912..36680893-chr2:36680931..36685254,3	MCF-7	breast:
2	chr2:36582359..36584332-chr2:36684564..36688180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28622501	0.83[ASN][1000 genomes]
rs3770872	0.81[ASN][1000 genomes]
rs756203	0.84[ASN][1000 genomes]
rs940294	0.80[ASN][1000 genomes]
rs940295	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
2	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:36666400-36686800	Weak transcription	Gastric	stomach
4	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
6	chr2:36669400-36688000	Weak transcription	Fetal Thymus	thymus
7	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
8	chr2:36672800-36688000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:36673600-36688000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:36675400-36688000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:36676600-36685200	Enhancers	Fetal Heart	heart
12	chr2:36678000-36688000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:36678400-36688000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:36678800-36685600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:36679000-36686200	Strong transcription	NHEK	skin
16	chr2:36679000-36687600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:36679200-36688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:36679800-36687200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
20	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:36681000-36686600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:36681600-36685400	Weak transcription	Hela-S3	cervix
23	chr2:36682200-36685000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr2:36682200-36686200	Enhancers	Spleen	Spleen
25	chr2:36682400-36687000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:36682400-36688800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:36682600-36686000	Strong transcription	HepG2	liver
28	chr2:36682600-36686800	Enhancers	Fetal Kidney	kidney
29	chr2:36682600-36687800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr2:36682800-36685400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr2:36682800-36685800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr2:36683000-36687600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr2:36683200-36685200	Enhancers	Fetal Intestine Small	intestine
34	chr2:36683400-36686000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr2:36683400-36688200	Weak transcription	Primary B cells from cord blood	blood
36	chr2:36683400-36691400	Enhancers	H1 Cell Line	embryonic stem cell
37	chr2:36683800-36685000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr2:36683800-36685000	Enhancers	Adipose Nuclei	Adipose
39	chr2:36683800-36685400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr2:36683800-36685600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:36683800-36686800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:36683800-36686800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:36683800-36686800	Weak transcription	Esophagus	oesophagus
44	chr2:36683800-36687800	Weak transcription	Liver	Liver
45	chr2:36683800-36688000	Genic enhancers	HUVEC	blood vessel
46	chr2:36683800-36690800	Genic enhancers	Osteobl	bone
47	chr2:36683800-36704000	Weak transcription	Pancreas	Pancrea
48	chr2:36684000-36685200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:36684000-36685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:36684000-36685200	Weak transcription	Aorta	Aorta

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