Variant report

Variant	rs377091020
Chromosome Location	chr16:80602969-80602970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80595839..80600096-chr16:80600224..80603898,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-2	chr16:80602713-80603584	ENSG00000250904

Variant related genes	Relation type
ENSG00000259867	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3451426	chr16:80601651-80603649	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3373306	chr16:80601951-80603199	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80598400-80603000	Weak transcription	Small Intestine	intestine
2	chr16:80599000-80603000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr16:80599000-80603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:80599000-80603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:80599000-80603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:80599200-80603000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:80599200-80603000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr16:80599200-80603000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr16:80599200-80603200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr16:80600200-80603400	Weak transcription	Hela-S3	cervix
12	chr16:80602600-80604400	Enhancers	Fetal Intestine Small	intestine
13	chr16:80602800-80603000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr16:80602800-80603400	Enhancers	Osteobl	bone
15	chr16:80602800-80604200	Enhancers	HUVEC	blood vessel
16	chr16:80602800-80604400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr16:80602800-80604400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr16:80602800-80604400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr16:80602800-80604400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr16:80602800-80604400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr16:80602800-80604400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:80602800-80604400	Enhancers	Fetal Intestine Large	intestine
23	chr16:80602800-80604400	Enhancers	NH-A	brain
24	chr16:80602800-80604400	Enhancers	NHEK	skin

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