Variant report

Variant	rs3771082
Chromosome Location	chr2:188255091-188255092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:188254302..188256367-chr2:188293903..188296593,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12479096	0.85[ASN][1000 genomes]
rs16828827	0.81[ASN][1000 genomes]
rs16828851	0.90[ASN][1000 genomes]
rs16828854	0.90[ASN][1000 genomes]
rs16828891	0.92[ASN][1000 genomes]
rs16828917	0.92[ASN][1000 genomes]
rs16828925	0.92[ASN][1000 genomes]
rs16829012	0.90[ASN][1000 genomes]
rs1706259	0.92[ASN][1000 genomes]
rs2268300	0.82[ASN][1000 genomes]
rs3771063	0.86[ASN][1000 genomes]
rs3771066	0.88[ASN][1000 genomes]
rs3771085	1.00[ASN][1000 genomes]
rs41393945	0.86[ASN][1000 genomes]
rs4667161	0.81[ASN][1000 genomes]
rs4667165	0.88[ASN][1000 genomes]
rs55785596	0.92[ASN][1000 genomes]
rs55794230	0.85[ASN][1000 genomes]
rs55812951	0.88[ASN][1000 genomes]
rs55907979	0.92[ASN][1000 genomes]
rs56035809	0.92[ASN][1000 genomes]
rs57732150	0.81[EUR][1000 genomes]
rs61080294	0.93[ASN][1000 genomes]
rs61343122	0.90[ASN][1000 genomes]
rs72904333	0.88[ASN][1000 genomes]
rs72904336	0.88[ASN][1000 genomes]
rs72904340	0.88[ASN][1000 genomes]
rs72904371	0.85[ASN][1000 genomes]
rs73979866	0.92[ASN][1000 genomes]
rs73979869	0.92[ASN][1000 genomes]
rs73981136	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73981186	0.90[ASN][1000 genomes]
rs73981187	0.90[ASN][1000 genomes]
rs73981194	0.92[ASN][1000 genomes]
rs73981195	0.92[ASN][1000 genomes]
rs8176615	0.83[ASN][1000 genomes]
rs8176627	0.83[ASN][1000 genomes]
rs840565	0.83[ASN][1000 genomes]
rs840579	0.81[ASN][1000 genomes]
rs840598	0.87[ASN][1000 genomes]
rs840599	0.92[ASN][1000 genomes]
rs9288141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv875557	chr2:188219052-188370232	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv875558	chr2:188219052-188388311	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv875559	chr2:188219052-188390112	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv875560	chr2:188219052-188508011	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv875561	chr2:188226900-188440752	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188214600-188257800	Weak transcription	Ovary	ovary
2	chr2:188223000-188255200	Weak transcription	Fetal Stomach	stomach
3	chr2:188223800-188257800	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:188240400-188257800	Weak transcription	Lung	lung
5	chr2:188245000-188257200	Weak transcription	Fetal Kidney	kidney
6	chr2:188249000-188255600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:188250800-188257400	Weak transcription	Left Ventricle	heart
8	chr2:188251800-188255400	Weak transcription	Aorta	Aorta
9	chr2:188252200-188255400	Weak transcription	HUVEC	blood vessel
10	chr2:188252200-188258600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:188252200-188258800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:188252200-188260000	Weak transcription	Primary hematopoietic stem cells	blood

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