Variant report

Variant	rs377122677
Chromosome Location	chr6:143820922-143820923
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143820850-143821538	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143818729..143821756-chr6:143830750..143834013,3	MCF-7	breast:
2	chr6:143804689..143809307-chr6:143816988..143822898,5	K562	blood:
3	chr6:143760601..143762958-chr6:143820757..143822738,2	K562	blood:

Variant related genes	Relation type
ENSG00000229036	TF binding region
ENSG00000001036	Chromatin interaction
ENSG00000229036	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757193	chr6:143820009-143825104	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2759475	chr6:143820009-143825104	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
3	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
5	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
7	chr6:143790200-143831600	Weak transcription	Gastric	stomach
8	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
9	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:143797000-143826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:143798800-143821400	Weak transcription	HMEC	breast
13	chr6:143799000-143827000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:143805200-143827800	Weak transcription	Fetal Heart	heart
16	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:143811800-143829400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:143812000-143827400	Weak transcription	Pancreas	Pancrea
19	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
20	chr6:143812400-143826800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:143812400-143829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
23	chr6:143812600-143831800	Weak transcription	NHEK	skin
24	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:143813000-143826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:143813400-143828400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:143813400-143829600	Strong transcription	Fetal Intestine Large	intestine
28	chr6:143813800-143828400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:143814200-143825600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:143814200-143828200	Strong transcription	HSMM	muscle
31	chr6:143814200-143828800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:143814200-143829600	Strong transcription	K562	blood
33	chr6:143814400-143825600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr6:143814600-143823800	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:143814600-143828200	Strong transcription	HepG2	liver
37	chr6:143814600-143828600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:143814600-143831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:143814800-143822200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:143814800-143825400	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:143814800-143825400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:143814800-143827200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:143814800-143828200	Strong transcription	Left Ventricle	heart
44	chr6:143814800-143828200	Strong transcription	NHLF	lung
45	chr6:143814800-143828400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:143814800-143828400	Strong transcription	Adipose Nuclei	Adipose
47	chr6:143814800-143829000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:143814800-143829200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:143814800-143829400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:143814800-143831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links