Variant report

Variant rs3771238
Chromosome Location chr2:20414258-20414259
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:20391800-20423200 Weak transcription Right Atrium heart
2 chr2:20404000-20422400 Weak transcription Brain Germinal Matrix brain
3 chr2:20404600-20420800 Enhancers Stomach Mucosa stomach
4 chr2:20405000-20415000 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr2:20405200-20414600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr2:20405800-20416200 Enhancers Gastric stomach
7 chr2:20407800-20414800 Enhancers Colonic Mucosa Colon
8 chr2:20408600-20414800 Enhancers Placenta Placenta
9 chr2:20409400-20414400 Weak transcription Small Intestine intestine
10 chr2:20409400-20414800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
11 chr2:20409800-20414800 Weak transcription Lung lung
12 chr2:20410400-20416200 Genic enhancers Fetal Intestine Small intestine
13 chr2:20410600-20417400 Enhancers Fetal Intestine Large intestine
14 chr2:20410800-20414800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr2:20410800-20415200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr2:20410800-20415400 Enhancers H1 Cell Line embryonic stem cell
17 chr2:20411000-20415400 Enhancers HUES6 Cell Line embryonic stem cell
18 chr2:20411400-20414600 Enhancers Fetal Thymus thymus
19 chr2:20411400-20414800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr2:20411600-20414600 Enhancers Fetal Adrenal Gland Adrenal Gland
21 chr2:20411600-20414800 Transcr. at gene 5' and 3' NHEK skin
22 chr2:20411800-20414400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr2:20411800-20414800 Enhancers Placenta Amnion Placenta Amnion
24 chr2:20412000-20414400 Flanking Active TSS HMEC breast
25 chr2:20412000-20415000 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr2:20412400-20416000 Flanking Active TSS HepG2 liver
27 chr2:20412600-20414800 Enhancers HUES48 Cell Line embryonic stem cell
28 chr2:20412600-20415400 Enhancers A549 lung
29 chr2:20412600-20420600 Weak transcription NHLF lung
30 chr2:20412800-20415000 Enhancers iPS-20b Cell Line embryonic stem cell
31 chr2:20412800-20416400 Enhancers Rectal Mucosa Donor 29 rectum
32 chr2:20413000-20415000 Enhancers iPS-18 Cell Line embryonic stem cell
33 chr2:20413000-20415600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr2:20413000-20416200 Enhancers Sigmoid Colon Sigmoid Colon
35 chr2:20413000-20417600 Enhancers Rectal Mucosa Donor 31 rectum
36 chr2:20413200-20420600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr2:20413200-20423000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr2:20413400-20414800 Enhancers Esophagus oesophagus
39 chr2:20413400-20419800 Weak transcription Pancreas Pancrea
40 chr2:20413400-20420600 Weak transcription NH-A brain
41 chr2:20413400-20421000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr2:20413600-20414400 Enhancers Liver Liver
43 chr2:20413600-20414600 Enhancers ES-WA7 Cell Line embryonic stem cell
44 chr2:20413600-20414600 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr2:20413600-20414800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
46 chr2:20413800-20414400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr2:20413800-20414600 Weak transcription Fetal Kidney kidney
48 chr2:20413800-20417600 Enhancers Duodenum Mucosa Duodenum
49 chr2:20413800-20418400 Weak transcription Fetal Lung lung
50 chr2:20414000-20414600 Enhancers HUES64 Cell Line embryonic stem cell

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