Variant report

Variant	rs377157458
Chromosome Location	chr20:24216094-24216095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24215600-24217200	Enhancers	Brain Substantia Nigra	brain
2	chr20:24215800-24216400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:24215800-24216400	Enhancers	Brain Anterior Caudate	brain
4	chr20:24215800-24216600	Active TSS	Fetal Muscle Trunk	muscle
5	chr20:24215800-24217000	Enhancers	Brain Cingulate Gyrus	brain
6	chr20:24215800-24217200	Enhancers	Brain Germinal Matrix	brain
7	chr20:24215800-24217200	Enhancers	Brain Hippocampus Middle	brain
8	chr20:24215800-24217200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr20:24215800-24217600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:24215800-24217800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr20:24216000-24216800	Enhancers	Fetal Kidney	kidney
12	chr20:24216000-24216800	Enhancers	Pancreas	Pancrea
13	chr20:24216000-24217000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr20:24216000-24217000	Weak transcription	Fetal Muscle Leg	muscle
15	chr20:24216000-24217200	Enhancers	Brain Angular Gyrus	brain
16	chr20:24216000-24217200	Enhancers	Fetal Stomach	stomach
17	chr20:24216000-24217800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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