Variant report

Variant	rs377177996
Chromosome Location	chr9:102862931-102862932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102860210..102863951-chr9:102865614..102871017,5	K562	blood:
2	chr9:102861067..102864152-chr9:102881091..102884307,4	K562	blood:
3	chr9:102581254..102583712-chr9:102860113..102863116,3	K562	blood:

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000270995	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv3343459	chr9:102862156-102864304	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3405434	chr9:102862531-102863979	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102866400	Weak transcription	Lung	lung
2	chr9:102862200-102866400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:102862200-102876800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:102862200-102876800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:102862200-102879800	Weak transcription	Esophagus	oesophagus
6	chr9:102862200-102881000	Weak transcription	Gastric	stomach
7	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:102862400-102863000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:102862400-102863800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:102862400-102865000	Weak transcription	Thymus	Thymus
11	chr9:102862400-102865800	Weak transcription	Aorta	Aorta
12	chr9:102862400-102866200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:102862400-102866200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:102862400-102866200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:102862400-102866200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:102862400-102866200	Weak transcription	Ovary	ovary
17	chr9:102862400-102866400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:102862400-102866400	Weak transcription	Left Ventricle	heart
19	chr9:102862400-102866400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:102862400-102867800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:102862400-102868200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:102862400-102870000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:102862400-102881400	Weak transcription	Colonic Mucosa	Colon
24	chr9:102862600-102863400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:102862600-102863600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:102862600-102866200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr9:102862600-102866400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:102862600-102866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:102862600-102866400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:102862600-102866800	Weak transcription	Fetal Brain Male	brain
31	chr9:102862600-102867600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:102862600-102867800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:102862600-102867800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:102862800-102863400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:102862800-102863400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:102862800-102863400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:102862800-102863400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:102862800-102863400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:102862800-102863400	Weak transcription	Fetal Thymus	thymus
40	chr9:102862800-102863400	Weak transcription	NHDF-Ad	bronchial
41	chr9:102862800-102863600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:102862800-102863600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:102862800-102863600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:102862800-102863600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:102862800-102863600	Weak transcription	Primary B cells from cord blood	blood
46	chr9:102862800-102863600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:102862800-102863600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:102862800-102863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:102862800-102863600	Weak transcription	Fetal Intestine Large	intestine
50	chr9:102862800-102863600	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links