Variant report

Variant	rs377227244
Chromosome Location	chr2:56701394-56701395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56694865..56697843-chr2:56699153..56701707,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752438	chr2:56700945-56788111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56700400-56701400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:56700400-56701800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:56700400-56702000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:56700400-56702200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:56700400-56702400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:56700600-56701400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr2:56700600-56701400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:56700600-56701600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:56700600-56702200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:56700600-56703000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:56700800-56701600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:56700800-56703400	Enhancers	Adipose Nuclei	Adipose
13	chr2:56701000-56701600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:56701000-56703000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr2:56701200-56701400	Enhancers	Left Ventricle	heart
16	chr2:56701200-56701400	Enhancers	Right Atrium	heart
17	chr2:56701200-56701600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:56701200-56701600	Enhancers	Fetal Intestine Large	intestine
19	chr2:56701200-56702000	Enhancers	Fetal Intestine Small	intestine
20	chr2:56701200-56702000	Enhancers	Right Ventricle	heart
21	chr2:56701200-56702200	Enhancers	Pancreas	Pancrea
22	chr2:56701200-56702600	Enhancers	Hela-S3	cervix
23	chr2:56701200-56702800	Enhancers	Liver	Liver
24	chr2:56701200-56703000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr2:56701200-56703200	Enhancers	Fetal Heart	heart

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