Variant report

Variant	rs377233204
Chromosome Location	chr15:39744423-39744424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39742666..39745111-chr15:39746881..39749174,2	K562	blood:
2	chr15:39743414..39749749-chr15:39871400..39878085,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	esv3419623	chr15:39742460-39746758	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3310891	chr15:39743285-39746233	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv512393	chr15:39743292-39745551	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3528510	chr15:39743685-39745883	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv9690	chr15:39744127-39745138	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3310895	chr15:39744160-39745408	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3310893	chr15:39744261-39744955	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv569223	chr15:39744272-39744669	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv569224	chr15:39744272-39748158	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv511556	chr15:39744272-39748389	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv820042	chr15:39744277-39744900	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3528502	chr15:39744282-39744960	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3528509	chr15:39744286-39744946	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3528508	chr15:39744305-39744884	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3310896	chr15:39744316-39744921	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3310892	chr15:39744322-39744931	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3310894	chr15:39744325-39744878	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv3528504	chr15:39744332-39744909	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv3528503	chr15:39744337-39744895	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3344714	chr15:39744352-39744879	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv2907	chr15:39744359-39744981	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv827303	chr15:39744366-39744870	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv3310898	chr15:39744377-39744864	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv3528505	chr15:39744389-39744859	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv991700	chr15:39744390-39744858	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	esv1448635	chr15:39744391-39744860	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	esv3310899	chr15:39744391-39744861	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	esv3528511	chr15:39744391-39744861	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	esv16434	chr15:39744398-39744844	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv827304	chr15:39744400-39744870	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39727200-39746800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:39740400-39745400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:39740400-39745400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:39740400-39747200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:39740800-39745400	Weak transcription	GM12878-XiMat	blood
7	chr15:39742400-39744600	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:39743000-39745400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:39743000-39745600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:39743800-39744600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:39743800-39745400	Weak transcription	Osteobl	bone
12	chr15:39743800-39745600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:39744000-39745000	Enhancers	HUVEC	blood vessel
14	chr15:39744000-39747600	Weak transcription	NHLF	lung
15	chr15:39744200-39745200	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:39744200-39745200	Weak transcription	Fetal Stomach	stomach
17	chr15:39744200-39745600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:39744200-39745600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:39744200-39745600	Weak transcription	NHDF-Ad	bronchial
20	chr15:39744400-39745400	Weak transcription	Fetal Lung	lung
21	chr15:39744400-39748400	Weak transcription	Rectal Mucosa Donor 29	rectum

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