Variant report

Variant	rs3772637
Chromosome Location	chr3:134913950-134913951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11710182	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13063564	1.00[YRI][hapmap]
rs1392918	0.81[CEU][hapmap]
rs1501207	0.80[CEU][hapmap]
rs2270882	0.81[CEU][hapmap]
rs3772638	0.80[CEU][hapmap]
rs3772640	0.85[CEU][hapmap]
rs4569681	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs882058	0.95[CEU][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3772637	EPHB1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134889000-134924600	Weak transcription	Brain Anterior Caudate	brain
2	chr3:134907400-134922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:134909000-134932400	Weak transcription	Psoas Muscle	Psoas
4	chr3:134910000-134914800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:134910000-134926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134910200-134923400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:134910800-134932600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:134911000-134922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:134912600-134916600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:134912600-134923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:134912800-134916200	Weak transcription	Brain Angular Gyrus	brain
12	chr3:134913400-134914200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr3:134913600-134920000	Weak transcription	Fetal Brain Female	brain
14	chr3:134913800-134935600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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