Variant report

Variant	rs3772659
Chromosome Location	chr3:134657068-134657069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16842278	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16842301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842351	0.87[AMR][1000 genomes]
rs36191	1.00[EUR][1000 genomes]
rs36192	0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3772674	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3796196	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:134653200-134657600	Enhancers	Brain Anterior Caudate	brain
3	chr3:134653400-134657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:134653800-134659000	Enhancers	Brain Germinal Matrix	brain
5	chr3:134654200-134657400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134654600-134658200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:134654800-134657200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134654800-134658800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:134655000-134659400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:134655200-134657200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:134655600-134658400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:134655800-134657400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:134655800-134658000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:134655800-134658200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr3:134655800-134658200	Enhancers	Fetal Brain Female	brain
16	chr3:134655800-134658600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:134655800-134658600	Enhancers	Fetal Brain Male	brain
18	chr3:134656000-134657400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr3:134656200-134657800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:134656200-134658000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:134656400-134657200	Enhancers	Right Atrium	heart
22	chr3:134656400-134657400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:134656600-134657400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:134656600-134658200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
26	chr3:134656800-134657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:134657000-134657200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr3:134657000-134657600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr3:134657000-134658600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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