Variant report

Variant	rs377345109
Chromosome Location	chr18:8995816-8995817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3317557	chr18:8995687-8995855	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3317558	chr18:8995701-8995856	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8990600-8998800	Weak transcription	A549	lung
2	chr18:8991400-8996600	Weak transcription	Liver	Liver
3	chr18:8991400-8998400	Weak transcription	Colon Smooth Muscle	Colon
4	chr18:8991400-8998600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:8991600-8996000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:8991600-8996200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr18:8991600-8998600	Weak transcription	NH-A	brain
8	chr18:8991800-8996000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr18:8991800-8996400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr18:8991800-8998600	Weak transcription	NHLF	lung
11	chr18:8994400-8996800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr18:8995200-8996200	Weak transcription	HMEC	breast
13	chr18:8995400-8996000	Weak transcription	K562	blood
14	chr18:8995800-8996600	Enhancers	NHDF-Ad	bronchial
15	chr18:8995800-8997000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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