Variant report

Variant	rs377350290
Chromosome Location	chr1:56278019-56278020
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv527396	chr1:56269821-56280909	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56276600-56280200	Enhancers	Hela-S3	cervix
2	chr1:56277400-56278600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:56277400-56280000	Enhancers	NHDF-Ad	bronchial
4	chr1:56277400-56280200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56277600-56278200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:56277600-56279000	Enhancers	Ovary	ovary
7	chr1:56277600-56279800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56277600-56279800	Enhancers	Osteobl	bone
9	chr1:56277600-56280000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56277600-56280000	Enhancers	NHLF	lung
11	chr1:56277800-56278600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:56277800-56281000	Weak transcription	Fetal Intestine Large	intestine
13	chr1:56278000-56278400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:56278000-56278400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56278000-56278600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:56278000-56279000	Enhancers	Placenta	Placenta
17	chr1:56278000-56280000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:56278000-56280000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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