Variant report

Variant	rs377371
Chromosome Location	chr12:42000177-42000178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs286980	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs286983	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs286984	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs286985	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs286986	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs287033	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs365385	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366554	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs366921	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs366959	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387546	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs421995	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs441162	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs452257	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7138511	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41998000-42000600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:41998400-42001400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:41998600-42001200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:41998800-42000200	Enhancers	Fetal Lung	lung
5	chr12:41998800-42001000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:41998800-42001000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:41998800-42001200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:41998800-42001200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:41998800-42001200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:41998800-42001200	Enhancers	Fetal Kidney	kidney
11	chr12:41998800-42001400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:41998800-42001400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:41998800-42001400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:41999000-42000200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:41999000-42000600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr12:41999200-42001400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr12:41999400-42001200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:41999600-42000200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:41999600-42000200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr12:41999600-42001200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:41999600-42001200	Enhancers	Brain Germinal Matrix	brain
22	chr12:41999800-42000200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:41999800-42000200	Enhancers	Spleen	Spleen
24	chr12:41999800-42001200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:42000000-42000400	Enhancers	Fetal Muscle Leg	muscle

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