Variant report

Variant	rs377404232
Chromosome Location	chr11:100802904-100802905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:100802700-100803014	HepG2	liver:	n/a	chr11:100802834-100802847
2	JUND	chr11:100802706-100802992	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100448550..100449412-chr11:100802794..100803475,2	K562	blood:

Variant related genes	Relation type
ENSG00000238388	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1054453	chr11:100802521-100814626	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1037830	chr11:100802521-100818129	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1051139	chr11:100802521-100819447	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100772000-100831400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:100773800-100809800	Weak transcription	Left Ventricle	heart
3	chr11:100774800-100812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:100784000-100808800	Weak transcription	Primary B cells from cord blood	blood
5	chr11:100785400-100838400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:100786800-100806800	Weak transcription	Placenta	Placenta
7	chr11:100790000-100803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:100790200-100812600	Weak transcription	Stomach Mucosa	stomach
9	chr11:100790400-100806600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:100793400-100807000	Weak transcription	Liver	Liver
11	chr11:100794200-100803000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:100794200-100807000	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:100794400-100812800	Weak transcription	Fetal Stomach	stomach
14	chr11:100795600-100807400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:100797600-100811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:100798600-100807600	Weak transcription	Ovary	ovary
17	chr11:100798600-100811600	Weak transcription	Fetal Lung	lung
18	chr11:100798600-100812800	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:100798600-100826600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:100798600-100828200	Weak transcription	Gastric	stomach
21	chr11:100798800-100807000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:100798800-100811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:100798800-100832200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:100799200-100804600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:100799200-100812800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:100799200-100812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:100800800-100835800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:100801000-100807000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:100801000-100809600	Weak transcription	Osteobl	bone
31	chr11:100801000-100812000	Weak transcription	Fetal Heart	heart
32	chr11:100801000-100814800	Weak transcription	HSMM	muscle
33	chr11:100801000-100819600	Weak transcription	HSMMtube	muscle
34	chr11:100801000-100823200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:100801000-100832400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:100801000-100835000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:100801400-100812600	Weak transcription	A549	lung
38	chr11:100801400-100833800	Weak transcription	NH-A	brain
39	chr11:100802800-100803000	Enhancers	Primary B cells from peripheral blood	blood
40	chr11:100802800-100803000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:100802800-100803600	Enhancers	GM12878-XiMat	blood
42	chr11:100802800-100803600	Enhancers	K562	blood

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