Variant report

Variant	rs377406468
Chromosome Location	chr6:28190208-28190209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:28189530-28190289	K562	blood:	n/a	n/a
2	ZNF384	chr6:28189996-28190324	K562	blood:	n/a	n/a
3	EP300	chr6:28189822-28190209	K562	blood:	n/a	n/a
4	POLR2A	chr6:28189386-28190282	K562	blood:	n/a	n/a
5	JUN	chr6:28190034-28190223	K562	blood:	n/a	n/a

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28184931..28189194-chr6:28190077..28194573,12	MCF-7	breast:
2	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
3	chr6:28188896..28191056-chr6:28251556..28253787,2	K562	blood:
4	chr6:28188764..28191744-chr6:28301995..28304592,2	MCF-7	breast:
5	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
6	chr6:28189695..28192033-chr6:28349571..28352462,4	K562	blood:
7	chr6:28186460..28191177-chr6:28246836..28252039,7	K562	blood:
8	chr6:28047206..28049069-chr6:28188430..28191262,2	K562	blood:
9	chr6:28127881..28130043-chr6:28189652..28192231,2	K562	blood:
10	chr6:28153153..28155076-chr6:28188462..28190523,2	K562	blood:
11	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
12	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
13	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
14	chr6:27834531..27836106-chr6:28188635..28190287,2	K562	blood:
15	chr6:28135337..28137302-chr6:28186822..28190274,4	K562	blood:
16	chr6:28187110..28190886-chr6:28224658..28229038,5	K562	blood:
17	chr6:28114623..28117122-chr6:28187567..28190304,2	K562	blood:
18	chr6:28184981..28190782-chr6:28297491..28307222,23	K562	blood:
19	chr6:28188437..28190413-chr6:28337561..28339400,2	K562	blood:
20	chr6:28130769..28134274-chr6:28187281..28190236,3	K562	blood:
21	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:
22	chr6:28163458..28166230-chr6:28188324..28191413,3	K562	blood:
23	chr6:28188391..28191172-chr6:28347437..28349201,2	K562	blood:
24	chr6:27860430..27862717-chr6:28186992..28190210,3	K562	blood:

No data

Variant related genes	Relation type
ZSCAN9	TF binding region
TOB2P1	TF binding region
ENSG00000176933	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000189134	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000184357	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	esv2634712	chr6:28189671-28191361	Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
3	esv7973	chr6:28189937-28190787	Enhancers Weak transcription	TF binding region Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
4	esv2131329	chr6:28189987-28190741	Weak transcription Enhancers	TF binding region Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
5	esv3494608	chr6:28190095-28190646	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
6	esv3494604	chr6:28190106-28190622	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
7	esv3472324	chr6:28190108-28190639	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	esv3472321	chr6:28190118-28190601	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	esv3494606	chr6:28190119-28190569	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	esv3472322	chr6:28190130-28190560	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
11	esv3710	chr6:28190130-28190602	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
12	esv3494602	chr6:28190131-28190622	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
13	esv3472323	chr6:28190134-28190604	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
14	esv3494605	chr6:28190146-28190591	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
15	esv3380822	chr6:28190166-28190561	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
16	esv3472325	chr6:28190179-28190542	Weak transcription Enhancers	TF binding region Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
17	esv3472326	chr6:28190195-28190550	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
18	esv3494603	chr6:28190196-28190534	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
19	esv3472327	chr6:28190196-28190545	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
20	esv3494609	chr6:28190196-28190545	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
21	esv2641632	chr6:28190197-28190533	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
22	esv1204759	chr6:28190207-28190544	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
23	nsv348491	chr6:28190208-28190544	Weak transcription Enhancers	TF binding region Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28186600-28192400	Weak transcription	Spleen	Spleen
2	chr6:28187000-28192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:28187000-28192400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:28187200-28190800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:28187200-28192000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:28187200-28192000	Weak transcription	HMEC	breast
7	chr6:28187200-28192200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:28187400-28192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:28187400-28192000	Weak transcription	Hela-S3	cervix
10	chr6:28188200-28191200	Weak transcription	Placenta	Placenta
11	chr6:28188600-28192400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:28188800-28192000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:28188800-28192000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:28190000-28190400	Weak transcription	NHEK	skin
15	chr6:28190000-28192400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:28190200-28192000	Weak transcription	K562	blood

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