Variant report

Variant	rs377413457
Chromosome Location	chr1:161007841-161007842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161006227..161009098-chr1:161086419..161089402,2	MCF-7	breast:
2	chr1:161007165..161010190-chr1:161058502..161060475,3	MCF-7	breast:
3	chr1:161007047..161009717-chr1:161100084..161102311,2	K562	blood:
4	chr1:160989087..160991942-chr1:161007144..161014242,6	K562	blood:
5	chr1:161007801..161009697-chr1:161067796..161070375,2	K562	blood:
6	chr1:161006354..161009878-chr1:161042497..161045575,4	MCF-7	breast:
7	chr1:160988819..160994033-chr1:161005548..161011188,8	MCF-7	breast:
8	chr1:161007064..161010778-chr1:161101040..161104167,3	MCF-7	breast:
9	chr1:160989495..160995605-chr1:161004888..161010340,15	MCF-7	breast:
10	chr1:161006846..161009787-chr1:161123441..161125743,2	MCF-7	breast:
11	chr1:160988071..160992174-chr1:161007125..161014242,7	K562	blood:
12	chr1:161005808..161012985-chr1:161064732..161070101,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158796	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000143222	Chromatin interaction
ENSG00000158793	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000143217	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv947201	chr1:161006051-161013276	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv548059	chr1:161007326-161010791	Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160992200-161008000	Weak transcription	HUVEC	blood vessel
2	chr1:160997200-161008000	Weak transcription	A549	lung
3	chr1:161003000-161008200	Weak transcription	Osteobl	bone
4	chr1:161003200-161008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:161004000-161009200	Weak transcription	Hela-S3	cervix
6	chr1:161004200-161008000	Weak transcription	Spleen	Spleen
7	chr1:161005000-161009400	Weak transcription	K562	blood
8	chr1:161005600-161008000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:161005800-161008200	Weak transcription	Right Ventricle	heart
10	chr1:161005800-161008200	Weak transcription	NHLF	lung
11	chr1:161006000-161008000	Weak transcription	Brain Anterior Caudate	brain
12	chr1:161006000-161008200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:161006400-161008000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:161006600-161008200	Weak transcription	Brain Angular Gyrus	brain
15	chr1:161007000-161008000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:161007000-161008000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:161007000-161008000	Genic enhancers	Adipose Nuclei	Adipose
18	chr1:161007000-161008000	Enhancers	Liver	Liver
19	chr1:161007000-161009200	Weak transcription	NHDF-Ad	bronchial
20	chr1:161007000-161013400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:161007200-161008000	Enhancers	Fetal Thymus	thymus
22	chr1:161007200-161008000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:161007200-161008200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:161007200-161008200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr1:161007200-161008200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:161007200-161008200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:161007200-161008200	Enhancers	Fetal Heart	heart
28	chr1:161007200-161008200	Enhancers	Stomach Mucosa	stomach
29	chr1:161007200-161008800	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr1:161007200-161009000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr1:161007400-161008000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:161007400-161008000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:161007400-161008000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr1:161007400-161008200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:161007400-161008200	Active TSS	Muscle Satellite Cultured Cells	--
36	chr1:161007400-161008200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:161007400-161008200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:161007400-161008200	Strong transcription	Brain Substantia Nigra	brain
39	chr1:161007400-161008200	Enhancers	Fetal Lung	lung
40	chr1:161007400-161008200	Enhancers	Gastric	stomach
41	chr1:161007400-161008400	Flanking Active TSS	Fetal Brain Female	brain
42	chr1:161007400-161008600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:161007400-161009000	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr1:161007400-161009200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr1:161007400-161009200	Active TSS	Rectal Smooth Muscle	rectum
46	chr1:161007400-161013400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:161007400-161013400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr1:161007400-161013400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:161007400-161013400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:161007600-161008000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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