Variant report

Variant	rs3774423
Chromosome Location	chr3:53553086-53553087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53552361..53553110-chr3:53585085..53585894,4	MCF-7	breast:
2	chr3:53552367..53553946-chr3:53584985..53585902,8	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56755560	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59968724	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3434928	chr3:53550812-53554010	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53540600-53560000	Weak transcription	Pancreas	Pancrea
2	chr3:53547200-53553200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:53551200-53554400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:53551400-53559000	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:53551400-53559800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:53552000-53553600	Enhancers	Placenta	Placenta
7	chr3:53552000-53554000	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr3:53552000-53554000	Flanking Active TSS	Hela-S3	cervix
9	chr3:53552000-53554400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:53552200-53553200	Enhancers	Liver	Liver
11	chr3:53552200-53553200	Enhancers	Brain Anterior Caudate	brain
12	chr3:53552200-53553200	Enhancers	Spleen	Spleen
13	chr3:53552200-53555000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:53552400-53553200	Enhancers	Ovary	ovary
15	chr3:53552400-53553600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:53552400-53553600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:53552400-53554000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:53552600-53553200	Flanking Active TSS	Fetal Lung	lung
20	chr3:53552600-53553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:53552600-53553400	Enhancers	Colon Smooth Muscle	Colon
22	chr3:53552600-53553400	Genic enhancers	Fetal Intestine Large	intestine
23	chr3:53552600-53553400	Active TSS	A549	lung
24	chr3:53552600-53560200	Weak transcription	Lung	lung
25	chr3:53552800-53553400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr3:53552800-53553400	Enhancers	Fetal Stomach	stomach
27	chr3:53552800-53554000	Enhancers	Stomach Smooth Muscle	stomach
28	chr3:53553000-53553200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:53553000-53553200	Enhancers	Stomach Mucosa	stomach
30	chr3:53553000-53553600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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