Variant report

Variant	rs377444056
Chromosome Location	chr19:27733660-27733661
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:27733264..27735341-chr5:49544077..49545577,2	MCF-7	breast:
2	chr12:28945509..28947009-chr19:27732727..27734566,2	MCF-7	breast:
3	chr19:27732167..27734609-chr5:14472438..14475218,2	MCF-7	breast:
4	chr1:121483185..121485419-chr19:27730521..27734410,16	K562	blood:
5	chr19:27732780..27734287-chr3:119350472..119351972,2	MCF-7	breast:
6	chr19:18390431..18393009-chr19:27731584..27734229,2	MCF-7	breast:
7	chr1:121482889..121485426-chr19:27733290..27740540,17	K562	blood:
8	chr19:27732624..27734230-chr6:74223460..74226002,2	K562	blood:
9	chr10:42527520..42529802-chr19:27732626..27735592,2	K562	blood:
10	chr17:56707857..56709514-chr19:27731768..27734278,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000038382	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000130522	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398485	chr19:27731783-27736296	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
2	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	esv10692	chr19:27731835-27741199	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
4	esv3392989	chr19:27731874-27733840	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
5	esv3443406	chr19:27731991-27735488	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
6	nsv579117	chr19:27732000-27737113	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
7	nsv579118	chr19:27732000-27737699	Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
8	nsv579119	chr19:27732000-27738847	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
9	nsv579120	chr19:27732000-27740875	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
10	nsv579121	chr19:27732000-27769717	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
11	nsv579122	chr19:27732000-27884796	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
12	esv1792884	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
13	esv1813820	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
14	esv1817017	chr19:27732000-27972553	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
15	esv1818457	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
16	esv1829019	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
17	esv1813626	chr19:27732000-28036744	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
18	esv6253	chr19:27732001-27740579	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
19	esv9522	chr19:27732002-27740579	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Enhancers Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
20	esv6019	chr19:27732011-27733939	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
21	esv6189	chr19:27732011-27740575	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
22	esv3424028	chr19:27732023-27737547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
23	esv3361410	chr19:27732058-27734534	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
24	esv3329351	chr19:27732064-27734200	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
25	esv3328192	chr19:27732066-27735562	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
26	esv3352218	chr19:27732068-27733864	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
27	nsv482718	chr19:27732070-27934662	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
28	nsv833794	chr19:27732070-27934662	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
29	esv5247	chr19:27732085-27739831	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
30	esv7935	chr19:27732110-27739321	ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
31	esv7396	chr19:27732111-27734797	Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
32	esv7633	chr19:27732195-27739798	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
33	esv9320	chr19:27732205-27739798	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
34	esv6380	chr19:27732215-27739801	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
35	esv3395943	chr19:27732220-27736056	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
36	esv6081	chr19:27732228-27738933	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
37	esv5755	chr19:27732229-27739801	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
38	esv3388254	chr19:27732252-27736428	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
39	esv3426690	chr19:27732363-27737547	ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
40	esv7847	chr19:27732382-27739801	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
41	esv3380584	chr19:27732406-27733862	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
42	esv3343063	chr19:27732457-27736548	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
43	esv3377386	chr19:27732460-27734256	Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
44	esv3345758	chr19:27732460-27736296	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
45	esv3433346	chr19:27732463-27733919	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
46	nsv579123	chr19:27732545-27737699	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
47	esv3409752	chr19:27732650-27734118	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
48	esv3435793	chr19:27732650-27739215	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
49	esv3452053	chr19:27732672-27738898	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Enhancers	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
50	esv3451785	chr19:27732693-27734117	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27734600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:27731800-27734600	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr19:27731800-27734600	ZNF genes & repeats	Placenta	Placenta
4	chr19:27731800-27734800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:27731800-27734800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:27731800-27734800	ZNF genes & repeats	Esophagus	oesophagus
7	chr19:27731800-27734800	ZNF genes & repeats	Pancreas	Pancrea
8	chr19:27731800-27734800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
9	chr19:27731800-27734800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr19:27731800-27735000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr19:27731800-27735000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr19:27731800-27735000	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:27731800-27735400	ZNF genes & repeats	Fetal Thymus	thymus
14	chr19:27731800-27736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:27731800-27737000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
16	chr19:27731800-27737000	ZNF genes & repeats	Osteobl	bone
17	chr19:27731800-27738600	ZNF genes & repeats	Thymus	Thymus
18	chr19:27731800-27739000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
23	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
24	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
26	chr19:27731800-27739800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr19:27731800-27739800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:27731800-27739800	ZNF genes & repeats	Fetal Stomach	stomach
29	chr19:27731800-27740000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
30	chr19:27731800-27740000	ZNF genes & repeats	Colonic Mucosa	Colon
31	chr19:27731800-27740200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:27731800-27740400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr19:27731800-27740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr19:27731800-27740400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:27731800-27740400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:27731800-27740400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr19:27731800-27740400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
41	chr19:27731800-27740400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
42	chr19:27731800-27740400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
43	chr19:27731800-27740400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr19:27731800-27740400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:27731800-27740400	ZNF genes & repeats	Fetal Heart	heart
46	chr19:27731800-27740400	ZNF genes & repeats	Fetal Lung	lung
47	chr19:27731800-27740400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
48	chr19:27731800-27740400	ZNF genes & repeats	Small Intestine	intestine
49	chr19:27731800-27740400	ZNF genes & repeats	Stomach Mucosa	stomach
50	chr19:27731800-27740600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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