Variant report

Variant	rs377468
Chromosome Location	chr14:77691693-77691694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77563926..77566127-chr14:77690799..77692337,2	MCF-7	breast:
2	chr14:77687164..77689503-chr14:77690310..77692436,2	K562	blood:

Variant related genes	Relation type
ENSG00000198894	Chromatin interaction
ENSG00000259164	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17105547	0.84[AFR][1000 genomes]
rs34303205	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34927858	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs364699	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365831	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366155	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs369059	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs369447	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs370351	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs371931	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs378878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379540	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs384462	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385604	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392877	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs393187	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs394111	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs404728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412709	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414563	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs440869	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs441860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450587	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66593061	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67583341	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67717956	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7141445	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7141867	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9323639	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77685000-77692800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:77685400-77692600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:77686400-77712400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:77686600-77691800	Weak transcription	Fetal Intestine Small	intestine
6	chr14:77687000-77692000	Weak transcription	Brain Angular Gyrus	brain
7	chr14:77687000-77697000	Weak transcription	Brain Substantia Nigra	brain
8	chr14:77687000-77697200	Weak transcription	Brain Anterior Caudate	brain
9	chr14:77687000-77697800	Weak transcription	Pancreas	Pancrea
10	chr14:77687200-77692400	Weak transcription	Gastric	stomach
11	chr14:77687800-77692800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:77688400-77692800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:77688600-77692600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:77689400-77691800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:77689400-77702400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:77690000-77692600	Strong transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:77690400-77693800	Weak transcription	Fetal Brain Female	brain
18	chr14:77691000-77692200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:77691000-77692400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr14:77691200-77691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr14:77691200-77692600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr14:77691200-77693000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:77691400-77692000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr14:77691400-77692000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr14:77691400-77692800	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr14:77691600-77696800	Weak transcription	Brain Germinal Matrix	brain
27	chr14:77691600-77703000	Weak transcription	H9 Cell Line	embryonic stem cell

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