Variant report

Variant	rs377495414
Chromosome Location	chr1:78747873-78747874
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3382550	chr1:78747801-78747971	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3453334	chr1:78747846-78747926	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3494272	chr1:78747858-78747921	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3453335	chr1:78747860-78747923	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3494274	chr1:78747860-78747923	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78734800-78749400	Weak transcription	Liver	Liver
2	chr1:78745600-78752200	Weak transcription	NH-A	brain
3	chr1:78746400-78752200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:78746800-78752200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:78747000-78749400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:78747000-78749800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:78747000-78749800	Weak transcription	Osteobl	bone
8	chr1:78747000-78752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:78747000-78754600	Weak transcription	NHDF-Ad	bronchial
10	chr1:78747400-78749800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:78747400-78754000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:78747600-78752200	Weak transcription	Hela-S3	cervix
13	chr1:78747800-78752200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links