Variant report

Variant	rs377496045
Chromosome Location	chr4:535365-535366
allele	-/CCAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011715	chr4:43860-823487	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	esv2830422	chr4:72247-681939	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv532703	chr4:72447-614414	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv931097	chr4:72447-683874	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv532702	chr4:72447-755236	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
6	nsv532704	chr4:85040-628550	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1010829	chr4:147570-547070	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv536970	chr4:147570-547070	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1005224	chr4:507005-900281	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv536976	chr4:507005-900281	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv878245	chr4:509178-694613	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	esv3327893	chr4:534752-536850	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3401501	chr4:535152-536500	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:510000-535400	Weak transcription	Hela-S3	cervix
2	chr4:529800-542400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:530800-536000	Weak transcription	NHEK	skin
4	chr4:531600-535400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:531800-542600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:532000-535600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:532000-535800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:532000-536200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:532000-537000	Weak transcription	Primary T cells from cord blood	blood
10	chr4:532200-542600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:532200-549000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:532600-536800	Weak transcription	Ovary	ovary
13	chr4:532600-537000	Weak transcription	Aorta	Aorta
14	chr4:532800-536000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:532800-537000	Weak transcription	Fetal Intestine Small	intestine
16	chr4:533000-535400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:533000-535400	Weak transcription	HSMMtube	muscle
18	chr4:533000-535800	Weak transcription	Fetal Brain Female	brain
19	chr4:533000-536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:533000-536200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:533000-536400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:533000-537400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:533000-537400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:533000-537400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:533000-537600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:533200-535600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:533200-535600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:533200-535800	Weak transcription	Fetal Intestine Large	intestine
29	chr4:533200-536000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:533200-536200	Weak transcription	Left Ventricle	heart
31	chr4:533200-536200	Weak transcription	Osteobl	bone
32	chr4:533200-536400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:533200-536400	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:533200-536600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:533200-536600	Weak transcription	Placenta	Placenta
36	chr4:533200-538600	Weak transcription	Lung	lung
37	chr4:533400-536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:533600-535400	Weak transcription	Liver	Liver
39	chr4:533600-535400	Weak transcription	Brain Angular Gyrus	brain
40	chr4:533600-536600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:533600-538600	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:533600-542800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:534000-536400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links