The 2.0 version of rSNPBase

Variant report

Variant rs3775171
Chromosome Location chr4:86953810-86953811
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:86916800-86985400 Weak transcription Ovary ovary
2 chr4:86917000-86954000 Weak transcription Pancreas Pancrea
3 chr4:86936000-86975600 Weak transcription Brain Germinal Matrix brain
4 chr4:86936400-86954600 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr4:86936400-86990600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr4:86938200-86954200 Weak transcription Fetal Kidney kidney
7 chr4:86938600-86954000 Weak transcription Brain Cingulate Gyrus brain
8 chr4:86938600-86957800 Weak transcription Fetal Brain Female brain
9 chr4:86944600-86954200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr4:86944600-86963000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr4:86945400-86963200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr4:86946400-86954000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr4:86948200-86966600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr4:86949200-86988600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr4:86950600-86959200 Weak transcription Fetal Brain Male brain
16 chr4:86950600-86967000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr4:86952200-86956000 Weak transcription Spleen Spleen
18 chr4:86952600-86956400 Enhancers Fetal Heart heart
19 chr4:86953000-86954000 Enhancers Muscle Satellite Cultured Cells --
20 chr4:86953000-86954000 Enhancers HMEC breast
21 chr4:86953000-86954000 Enhancers Osteobl bone
22 chr4:86953000-86956200 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr4:86953200-86954000 Enhancers Primary hematopoietic stem cells blood
24 chr4:86953200-86954000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr4:86953200-86954000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr4:86953200-86954600 Enhancers Placenta Placenta
27 chr4:86953200-86954800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr4:86953200-86955200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr4:86953200-86955200 Enhancers Primary monocytes fromperipheralblood blood
30 chr4:86953200-86957000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr4:86953400-86954000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr4:86953400-86954000 Enhancers Stomach Smooth Muscle stomach
33 chr4:86953400-86954000 Enhancers NH-A brain
34 chr4:86953400-86954000 Enhancers NHEK skin
35 chr4:86953400-86954600 Enhancers Left Ventricle heart
36 chr4:86953400-86954800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr4:86953400-86955000 Enhancers Hela-S3 cervix
38 chr4:86953400-86955000 Enhancers NHLF lung
39 chr4:86953400-86955200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
40 chr4:86953400-86955200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr4:86953400-86955200 Enhancers Aorta Aorta
42 chr4:86953400-86955200 Enhancers Brain Hippocampus Middle brain
43 chr4:86953400-86955200 Enhancers Fetal Muscle Leg muscle
44 chr4:86953600-86954000 Enhancers HSMMtube muscle
45 chr4:86953600-86954800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr4:86953600-86954800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr4:86953600-86954800 Enhancers Placenta Amnion Placenta Amnion
48 chr4:86953600-86955000 Enhancers Duodenum Smooth Muscle Duodenum
49 chr4:86953600-86955200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr4:86953600-86955200 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015