Variant report

Variant	rs3775488
Chromosome Location	chr4:74862852-74862853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1072389	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3775488	CXCL3	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74848600-74863000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:74850800-74863000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:74852000-74863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:74856600-74863200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:74861600-74864800	Active TSS	A549	lung
6	chr4:74861800-74863200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:74861800-74865000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:74862600-74863000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:74862600-74863800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:74862800-74863000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr4:74862800-74863000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr4:74862800-74863000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:74862800-74865000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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