Variant report

Variant	rs3775637
Chromosome Location	chr4:143026625-143026626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12509457	0.83[JPT][hapmap]
rs13327961	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1511247	0.92[EUR][1000 genomes]
rs168061	0.86[CEU][hapmap]
rs2201696	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292392	0.83[JPT][hapmap]
rs2292393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28714697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336295	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs336297	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs336300	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs336308	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs336319	0.93[EUR][1000 genomes]
rs336331	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs336332	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34087587	0.93[EUR][1000 genomes]
rs3729592	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3756111	0.81[JPT][hapmap]
rs3756112	0.83[JPT][hapmap]
rs3756113	0.83[JPT][hapmap]
rs3775621	0.82[JPT][hapmap]
rs3775628	0.83[JPT][hapmap]
rs3775631	0.83[JPT][hapmap]
rs3822135	0.82[CHB][hapmap]
rs3822136	0.83[JPT][hapmap]
rs3822137	0.83[JPT][hapmap]
rs3822138	0.83[JPT][hapmap]
rs3822139	0.82[JPT][hapmap]
rs4637485	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6537099	0.83[JPT][hapmap]
rs6537100	0.83[JPT][hapmap]
rs6537101	0.82[CHB][hapmap]
rs6826672	0.83[JPT][hapmap]
rs6827563	0.83[JPT][hapmap]
rs6853350	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9996933	0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv428775	chr4:142943213-143050195	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142948400-143029200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:142988200-143029400	Weak transcription	Left Ventricle	heart
3	chr4:142990000-143051200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:143001400-143040600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:143002600-143041800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:143004600-143051600	Weak transcription	Pancreas	Pancrea
7	chr4:143010400-143043400	Weak transcription	Psoas Muscle	Psoas
8	chr4:143010400-143057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:143012400-143040600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:143014000-143035800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:143014600-143049600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:143015800-143027400	Weak transcription	Aorta	Aorta
13	chr4:143015800-143049600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:143016600-143030800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:143017800-143044400	Weak transcription	Fetal Heart	heart
16	chr4:143018000-143031000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:143018200-143029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:143018200-143033400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:143018800-143029000	Weak transcription	NHEK	skin
20	chr4:143018800-143109600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:143021400-143028600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:143022400-143030800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:143022400-143045200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:143022600-143033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:143022600-143049600	Weak transcription	NHDF-Ad	bronchial
26	chr4:143023000-143026800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:143023000-143027400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:143023200-143028600	Weak transcription	HSMM	muscle
29	chr4:143023400-143036200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:143025200-143027000	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:143025400-143028600	Weak transcription	Primary T cells from cord blood	blood
32	chr4:143025400-143035800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr4:143025400-143066800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:143025600-143028600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:143025800-143027000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:143025800-143027200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:143025800-143028600	Weak transcription	HMEC	breast
38	chr4:143025800-143029000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:143026000-143029000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:143026000-143029000	Weak transcription	Dnd41	blood
41	chr4:143026000-143029000	Weak transcription	HSMMtube	muscle
42	chr4:143026200-143027000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr4:143026200-143027800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:143026200-143029000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:143026400-143031600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:143026400-143031800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr4:143026600-143028600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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